RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SSX2Q16385 188 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 ZNF114Q8NC26 417 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 TMEM8BA6NDV4 472 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 CXorf65A6NEN9 183 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 OR5G3P0C626 314 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 RPS10P46783 165 aaKnown RBP11.54□□□□□ -0.56
VRK3-217ENST00000599538 RAB5BP61020 215 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 PAX2Q02962 417 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 C16orf82Q7Z2V1 217 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 SRSF12Q8WXF0 261 aaKnown RBP11.54□□□□□ -0.56
VRK3-217ENST00000599538 MALSU1Q96EH3 234 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 CRYBG3Q68DQ2 2970 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 DOPEY1Q5JWR5 2465 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 CLDN34H7C241 214 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 PDE6DO43924 150 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 OR10J4P0C629 311 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 PLGLAQ15195 96 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 PVRIGQ6DKI7 326 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 PATE2Q6UY27 113 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 UHRF2Q96PU4 802 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 GSX1Q9H4S2 264 aaPredicted RBP11.53□□□□□ -0.56
VRK3-217ENST00000599538 CELSR1Q9NYQ6 3014 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 MOSP00540 346 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 CRYGCP07315 174 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 HOXB4P17483 251 aaPredicted RBP11.53□□□□□ -0.56
VRK3-217ENST00000599538 SNRPEP62304 92 aaKnown RBP11.53□□□□□ -0.56
VRK3-217ENST00000599538 NECAP1Q8NC96 275 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 TMEM242Q9NWH2 141 aa11.53□□□□□ -0.56
VRK3-217ENST00000599538 MAP1AP78559 2803 aaPredicted RBP11.53□□□□□ -0.56
VRK3-217ENST00000599538 TCRBV4S1A1TA0A5B7 111 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 OVOL3O00110 214 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 NDUFS6O75380 124 aaKnown RBP11.52□□□□□ -0.57
VRK3-217ENST00000599538 LMO4P61968 165 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 THAP8Q8NA92 274 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 NANPQ8TBE9 248 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 EAF1Q96JC9 268 aaPredicted RBP11.52□□□□□ -0.57
VRK3-217ENST00000599538 FAM103A1Q9BTL3 118 aaKnown RBP11.52□□□□□ -0.57
VRK3-217ENST00000599538 ELOVL1Q9BW60 279 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 SIRPDQ9H106 197 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 MYO18BQ8IUG5 2567 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 ZFHX3Q15911 3703 aa11.52□□□□□ -0.57
VRK3-217ENST00000599538 OR7C2O60412 319 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 CLN5O75503 358 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 PRB1P04280 392 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 LINC01551Q86U37 167 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 FAM167A-AS1Q96KT0 104 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 BIN3Q9NQY0 253 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 TECRQ9NZ01 308 aaKnown RBP11.51□□□□□ -0.57
VRK3-217ENST00000599538 ABCA2Q9BZC7 2435 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 IGHV4-39P01824 125 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 HES1Q14469 280 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 CLEC12BQ2HXU8 276 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 OR1P1Q8NH06 330 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 RNF5Q99942 180 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 SLC25A2Q9BXI2 301 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 DNAJC4Q9NNZ3 241 aa11.51□□□□□ -0.57
VRK3-217ENST00000599538 F11RQ9Y624 299 aaKnown RBP11.51□□□□□ -0.57
VRK3-217ENST00000599538 F6UZH7 168 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 NBR2O15453 112 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 MT-CO2P00403 227 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 SNRPCP09234 159 aaKnown RBP11.5□□□□□ -0.57
VRK3-217ENST00000599538 HNF1AP20823 631 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 CEACAM3P40198 252 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 C1orf122Q6ZSJ8 110 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 CNIH1O95406 144 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 PFN1P07737 140 aaKnown RBP11.5□□□□□ -0.57
VRK3-217ENST00000599538 C8orf88P0DMB2 117 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 RPL35P42766 123 aaKnown RBP11.5□□□□□ -0.57
VRK3-217ENST00000599538 OR4X1Q8NH49 305 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 CTDSP1Q9GZU7 261 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 LPAR2Q9HBW0 351 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 TNFRSF19Q9NS68 423 aa11.5□□□□□ -0.57
VRK3-217ENST00000599538 IGHV2-70DA0A0C4DH43 119 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 C5orf52A6NGY3 159 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 NDUFA3O95167 84 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 PYYP10082 97 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 AKR1D1P51857 326 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 KIR3DL3Q8N743 410 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 FAM210BQ96KR6 192 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 TBX15Q96SF7 602 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 WNT10AQ9GZT5 417 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 ZNF355PQ9NSJ1 428 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 KLF2Q9Y5W3 355 aaPredicted RBP11.49□□□□□ -0.57
VRK3-217ENST00000599538 CELSR2Q9HCU4 2923 aa11.49□□□□□ -0.57
VRK3-217ENST00000599538 GGTLC3B5MD39 225 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 COX7A2P2O60397 106 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TSPAN9O75954 239 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TRGC2P03986 189 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 PQLC2Q6ZP29 291 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 C1QL4Q86Z23 238 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TMEM116Q8NCL8 245 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 NPBQ8NG41 125 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 OR5AU1Q8NGC0 362 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TXNDC17Q9BRA2 123 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 C19orf24Q9BVV8 132 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 CSMD2Q7Z408 3487 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 H7BYZ3 331 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TOX4O94842 621 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 KLF17Q5JT82 389 aaPredicted RBP11.48□□□□□ -0.57
VRK3-217ENST00000599538 C10orf113Q5VZT2 155 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms