RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 SELENOKQ9Y6D0 94 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 TENM3Q9P273 2699 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 HUWE1Q7Z6Z7 4374 aaKnown RBP12.49□□□□□ -0.41
USHBP1-208ENST00000598309 IGHV3OR16-8A0A075B7F1 116 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 DUXBA0A1W2PPF3 345 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 CEBPZOSA8MTT3 80 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 OPRK1P41145 380 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 TMED4Q7Z7H5 227 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 DEFB125Q8N687 156 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 SLC24A4Q8NFF2 622 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 GINS3Q9BRX5 216 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 WFDC10AQ9H1F0 79 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 SRD5A3Q9H8P0 318 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 HEYLQ9NQ87 328 aaPredicted RBP12.48□□□□□ -0.41
USHBP1-208ENST00000598309 PRR13Q9NZ81 148 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 SMPXQ9UHP9 88 aa12.48□□□□□ -0.41
USHBP1-208ENST00000598309 IGHV7-4-1A0A0J9YVY3 117 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 RPS10-NUDT3A0A1W2PQS6 291 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 ZNF207O43670 478 aaKnown RBP12.47□□□□□ -0.41
USHBP1-208ENST00000598309 SCGB2A1O75556 95 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 YIF1AO95070 293 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 SMCO1Q147U7 214 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 C2orf83Q53S99 150 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 ZNF600Q6ZNG1 722 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 TMEM116Q8NCL8 245 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 OR4X1Q8NH49 305 aa12.47□□□□□ -0.41
USHBP1-208ENST00000598309 FNDC4Q9H6D8 234 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-208ENST00000598309 RBMY1BA6NDE4 496 aaKnown RBP12.46□□□□□ -0.41
USHBP1-208ENST00000598309 RBMY1EA6NEQ0 496 aaKnown RBP12.46□□□□□ -0.41
USHBP1-208ENST00000598309 CLN5O75503 358 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 TMEM50AO95807 157 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 RBMY1DP0C7P1 496 aaKnown RBP12.46□□□□□ -0.41
USHBP1-208ENST00000598309 BMI1P35226 326 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 TNFRSF9Q07011 255 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 RBMS2Q15434 407 aaKnown RBP12.46□□□□□ -0.41
USHBP1-208ENST00000598309 TRIQKQ629K1 86 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 LYZL2Q7Z4W2 148 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 NOXA1Q86UR1 476 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 LRTM2Q8N967 370 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 RNASEH2CQ8TDP1 164 aaKnown RBP12.46□□□□□ -0.41
USHBP1-208ENST00000598309 RHPN1-AS1Q9BWJ2 59 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 HIPK2Q9H2X6 1198 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 HSPB7Q9UBY9 170 aa12.46□□□□□ -0.41
USHBP1-208ENST00000598309 TRAV14DV4A0A0A6YYC5 116 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 A0A1B0GU03 582 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 NAP1L6A6NFF2 107 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 C3orf84H3BNL1 204 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 CHEK1O14757 476 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 SLC25A4P12235 298 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 INPP1P49441 399 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 UBE2MP61081 183 aaKnown RBP12.45□□□□□ -0.42
USHBP1-208ENST00000598309 TOMM20LQ6UXN7 152 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 CITED4Q96RK1 184 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 ZFAND3Q9H8U3 227 aa12.45□□□□□ -0.42
USHBP1-208ENST00000598309 MRPL36Q9P0J6 103 aaKnown RBP12.45□□□□□ -0.42
USHBP1-208ENST00000598309 TRAV30A0A087WSZ9 112 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 OR4C46A6NHA9 309 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 CD5P06127 495 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 VAMP1P23763 118 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 NPY1RP25929 384 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 BAK1Q16611 211 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 CENPSQ8N2Z9 138 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 RNF2Q99496 336 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 FAM110AQ9BQ89 295 aa12.44□□□□□ -0.42
USHBP1-208ENST00000598309 PUS1Q9Y606 427 aaKnown RBP eCLIP12.44□□□□□ -0.42
USHBP1-208ENST00000598309 NXPH3O95157 252 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 SFT2D2O95562 160 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 SLC25A6P12236 298 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 ATP5IP56385 69 aaPredicted RBP12.43□□□□□ -0.42
USHBP1-208ENST00000598309 PPP1R1AQ13522 171 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 ETFRF1Q6IPR1 90 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 DTD1Q8TEA8 209 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 TMEM170AQ8WVE7 144 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 SDHCQ99643 169 aaPredicted RBP12.43□□□□□ -0.42
USHBP1-208ENST00000598309 VSIRQ9H7M9 311 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 U3KQ87 197 aa12.43□□□□□ -0.42
USHBP1-208ENST00000598309 PITX3O75364 302 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 NDUFB6O95139 128 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 IGKV1-17P01599 117 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 MLANAQ16655 118 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 PRSS54Q6PEW0 395 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 OR1S2Q8NGQ3 325 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 OR1S1Q8NH92 325 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 MUC7Q8TAX7 377 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 C7orf50Q9BRJ6 194 aaKnown RBP12.42□□□□□ -0.42
USHBP1-208ENST00000598309 GGTLC1Q9BX51 225 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 RBKSQ9H477 322 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 EDA2RQ9HAV5 297 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 TMED3Q9Y3Q3 217 aa12.42□□□□□ -0.42
USHBP1-208ENST00000598309 LOC102724200A0A096LPH7 203 aaPredicted RBP12.41□□□□□ -0.42
USHBP1-208ENST00000598309 IGHV3-49A0A0A0MS15 119 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 FAM90A26D6RGX4 464 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 IFNA10P01566 189 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 IGLC1P0CG04 106 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 RND2P52198 227 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 ODF3L2Q3SX64 289 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 FAM90A2PQ658T7 463 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 TMEM231Q9H6L2 316 aa12.41□□□□□ -0.42
USHBP1-208ENST00000598309 TIGITQ495A1 244 aa12.4□□□□□ -0.42
USHBP1-208ENST00000598309 ST8SIA2Q92186 375 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms