RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DEFA4P12838 97 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 EIF2B2P49770 351 aaKnown RBP7.33□□□□□ -1.24
TRIM28-208ENST00000597172 SULT1A1P50225 295 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 PROK1P58294 105 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 RAB11AP62491 216 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 KIAA0141Q14154 515 aaPredicted RBP7.33□□□□□ -1.24
TRIM28-208ENST00000597172 ETV3LQ6ZN32 361 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 ACOT7LQ6ZUV0 252 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 OR2T6Q8NHC8 308 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 WIPF2Q8TF74 440 aaPredicted RBP7.33□□□□□ -1.24
TRIM28-208ENST00000597172 MS4A10Q96PG2 267 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 MFFQ9GZY8 342 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 SLC25A31Q9H0C2 315 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 FNDC4Q9H6D8 234 aaPredicted RBP7.33□□□□□ -1.24
TRIM28-208ENST00000597172 WFDC1Q9HC57 220 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 PAIP2BQ9ULR5 123 aaKnown RBP7.33□□□□□ -1.24
TRIM28-208ENST00000597172 HSPB11Q9Y547 144 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 I3L2K1 104 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 K7EIM0 57 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 IGHG4P01861 327 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 IFNA4P05014 189 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 OR8U8P0C7N1 319 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 GPX4P36969 197 aaPredicted RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 AP2S1P53680 142 aaPredicted RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 ARSJQ5FYB0 599 aaPredicted RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 OR8G2PQ6IF36 304 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 LCNL1Q6ZST4 164 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 CENPVQ7Z7K6 275 aaPredicted RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 C9orf62Q8N4C0 152 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 KCNRGQ8N5I3 272 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 TMEM217Q8N7C4 229 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 INO80EQ8NBZ0 244 aaPredicted RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 OR1L6Q8NGR2 347 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 RNASEH2CQ8TDP1 164 aaKnown RBP7.32□□□□□ -1.24
TRIM28-208ENST00000597172 PPP1R14BQ96C90 147 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 ZNF355PQ9NSJ1 428 aa7.32□□□□□ -1.24
TRIM28-208ENST00000597172 IGHV3-21A0A0B4J1V1 117 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 PSMB11A5LHX3 300 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 H3BUA1 57 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 OR2J3O76001 311 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 MT-CO2P00403 227 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 IGHV3-48P01763 117 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 PSMB8P28062 276 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 S100A11P31949 105 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 NUP62P37198 522 aaPredicted RBP7.31□□□□□ -1.24
TRIM28-208ENST00000597172 RAB9AP51151 201 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 RHOGP84095 191 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 DEFA5Q01523 94 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 BAXQ07812 192 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 OR2F1Q13607 317 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 TCTEX1D4Q5JR98 221 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 TMUB2Q71RG4 321 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 STX12Q86Y82 276 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 OR10P1Q8NGE3 313 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 OR5C1Q8NGR4 320 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 SCARB1Q8WTV0 552 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 PINX1Q96BK5 328 aaKnown RBP7.31□□□□□ -1.24
TRIM28-208ENST00000597172 MISP3Q96FF7 219 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 B9D2Q9BPU9 175 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 GON7Q9BXV9 100 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 SMIM3Q9BZL3 60 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 CYTL1Q9NRR1 136 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 MRPL36Q9P0J6 103 aaKnown RBP7.31□□□□□ -1.24
TRIM28-208ENST00000597172 FBXL7Q9UJT9 491 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 BOLA1Q9Y3E2 137 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 U3KQK5 164 aa7.31□□□□□ -1.24
TRIM28-208ENST00000597172 A0A0D9SG52 128 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 MFSD2BA6NFX1 497 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 TRGV3P03979 118 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 HNRNPCP07910 306 aaKnown RBP eCLIP7.3□□□□□ -1.24
TRIM28-208ENST00000597172 ELANEP08246 267 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 PF4V1P10720 104 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 HIST1H1BP16401 226 aaKnown RBP7.3□□□□□ -1.24
TRIM28-208ENST00000597172 DLK1P80370 383 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 SLC38A11Q08AI6 406 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 FOXE3Q13461 319 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 EXOSC2Q13868 293 aaKnown RBP7.3□□□□□ -1.24
TRIM28-208ENST00000597172 GAMTQ14353 236 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 ZNF345Q14585 488 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 VWC2Q2TAL6 325 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 TEX38Q6PEX7 206 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 KLHDC1Q8N7A1 406 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 RNF152Q8N8N0 203 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 NECAP1Q8NC96 275 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 OR5AU1Q8NGC0 362 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 OR1S2Q8NGQ3 325 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 MYOZ3Q8TDC0 251 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 CACNG8Q8WXS5 425 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 GGACTQ9BVM4 153 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 ZC4H2Q9NQZ6 224 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 FBXL17Q9UF56 701 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 S4R3C0 116 aa7.3□□□□□ -1.24
TRIM28-208ENST00000597172 F8W735 103 aaPredicted RBP7.29□□□□□ -1.24
TRIM28-208ENST00000597172 CORTO00230 105 aa7.29□□□□□ -1.24
TRIM28-208ENST00000597172 CYB5BO43169 146 aa7.29□□□□□ -1.24
TRIM28-208ENST00000597172 RPLP1P05386 114 aaKnown RBP7.29□□□□□ -1.24
TRIM28-208ENST00000597172 OPRK1P41145 380 aa7.29□□□□□ -1.24
TRIM28-208ENST00000597172 SLC35B1P78383 322 aa7.29□□□□□ -1.24
TRIM28-208ENST00000597172 ATP5G2Q06055 141 aa7.29□□□□□ -1.24
TRIM28-208ENST00000597172 CLINT1Q14677 625 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms