RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 BRI3O95415 125 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 CDX1P47902 265 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-207ENST00000597136 BAXQ07812 192 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 DEFB136Q30KP8 78 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 TMEM217Q8N7C4 229 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 MISP3Q96FF7 219 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 BSCL2Q96G97 398 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-207ENST00000597136 MFFQ9GZY8 342 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 GNB4Q9HAV0 340 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 ZC4H2Q9NQZ6 224 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 HSPB11Q9Y547 144 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 NUDT19A8MXV4 375 aa11.61□□□□□ -0.55
TRIM28-207ENST00000597136 H3BUA1 57 aa11.61□□□□□ -0.55
TRIM28-207ENST00000597136 BOLA2-SMG1P6H3BVE0 249 aa11.61□□□□□ -0.55
TRIM28-207ENST00000597136 HIST1H1BP16401 226 aaKnown RBP11.61□□□□□ -0.55
TRIM28-207ENST00000597136 CXCL2P19875 107 aa11.61□□□□□ -0.55
TRIM28-207ENST00000597136 EIF2B2P49770 351 aaKnown RBP11.61□□□□□ -0.55
TRIM28-207ENST00000597136 AP2S1P53680 142 aaPredicted RBP11.61□□□□□ -0.55
TRIM28-207ENST00000597136 OR10P1Q8NGE3 313 aa11.61□□□□□ -0.55
TRIM28-207ENST00000597136 CORTO00230 105 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 IGHV3-11P01762 117 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 TRGV3P03979 118 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 NKX2-5P52952 324 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-207ENST00000597136 TPPP2P59282 170 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 RHOGP84095 191 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 OR2F1Q13607 317 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 EXOSC2Q13868 293 aaKnown RBP11.6□□□□□ -0.55
TRIM28-207ENST00000597136 TREML4Q6UXN2 200 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 PINX1Q96BK5 328 aaKnown RBP11.6□□□□□ -0.55
TRIM28-207ENST00000597136 PPP1R14BQ96C90 147 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 UBE2E2Q96LR5 201 aa11.6□□□□□ -0.55
TRIM28-207ENST00000597136 FNDC4Q9H6D8 234 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-207ENST00000597136 SORL1Q92673 2214 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 I3L2K1 104 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 OR2J3O76001 311 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 SCAF4O95104 1147 aaKnown RBP11.59□□□□□ -0.55
TRIM28-207ENST00000597136 NDUFB8O95169 186 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 HNRNPCP07910 306 aaKnown RBP eCLIP11.59□□□□□ -0.55
TRIM28-207ENST00000597136 S100A11P31949 105 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 OPRK1P41145 380 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 HBG1P69891 147 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 HBG2P69892 147 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 SLC38A11Q08AI6 406 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 ZNF345Q14585 488 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 MLANAQ16655 118 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 LGALSLQ3ZCW2 172 aaPredicted RBP11.59□□□□□ -0.55
TRIM28-207ENST00000597136 NECAP1Q8NC96 275 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 OR4F17Q8NGA8 305 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 RAX2Q96IS3 184 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 OR4F4Q96R69 305 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 SLA2Q9H6Q3 261 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 THYN1Q9P016 225 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 FBXL7Q9UJT9 491 aa11.59□□□□□ -0.55
TRIM28-207ENST00000597136 I3L521 148 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 K7EIM0 57 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 MT-CO2P00403 227 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 GPX4P36969 197 aaPredicted RBP11.58□□□□□ -0.55
TRIM28-207ENST00000597136 CD69Q07108 199 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 KCNRGQ8N5I3 272 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 OR1S2Q8NGQ3 325 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 OR5C1Q8NGR4 320 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 CACNG8Q8WXS5 425 aa11.58□□□□□ -0.55
TRIM28-207ENST00000597136 IGHV3-21A0A0B4J1V1 117 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 A0A0D9SG52 128 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 FAM223BA6NKX1 122 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 IGHV3-48P01763 117 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 DLK1P80370 383 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 C15orf32Q32M92 178 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 LAMTOR1Q6IAA8 161 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 ETFRF1Q6IPR1 90 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 FAM223AQ8IWN6 122 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 C9orf62Q8N4C0 152 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 GGACTQ9BVM4 153 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 SMIM3Q9BZL3 60 aa11.58□□□□□ -0.56
TRIM28-207ENST00000597136 FBN3Q75N90 2809 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 RPS10-NUDT3A0A1W2PQS6 291 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 MFSD2BA6NFX1 497 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 GAMTQ14353 236 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 CLINT1Q14677 625 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 ATP6V1FQ16864 119 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 TMUB2Q71RG4 321 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 SLC16A13Q7RTY0 426 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 LILRB2Q8N423 598 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 VN1R17PQ8TDU5 208 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 SCARB1Q8WTV0 552 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 C4orf3Q8WVX3 66 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 USMG5Q96IX5 58 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 ARL6Q9H0F7 186 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 WFDC1Q9HC57 220 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 FBXL17Q9UF56 701 aa11.57□□□□□ -0.56
TRIM28-207ENST00000597136 CCL24O00175 119 aa11.56□□□□□ -0.56
TRIM28-207ENST00000597136 ATP5G2Q06055 141 aa11.56□□□□□ -0.56
TRIM28-207ENST00000597136 OR11H1Q8NG94 326 aa11.56□□□□□ -0.56
TRIM28-207ENST00000597136 MRPL36Q9P0J6 103 aaKnown RBP11.56□□□□□ -0.56
TRIM28-207ENST00000597136 ANKRD34BA5PLL1 514 aa11.55□□□□□ -0.56
TRIM28-207ENST00000597136 FNDC10F2Z333 226 aa11.55□□□□□ -0.56
TRIM28-207ENST00000597136 PF4P02776 101 aa11.55□□□□□ -0.56
TRIM28-207ENST00000597136 VWC2Q2TAL6 325 aa11.55□□□□□ -0.56
TRIM28-207ENST00000597136 TMEM116Q8NCL8 245 aa11.55□□□□□ -0.56
TRIM28-207ENST00000597136 CXorf58Q96LI9 332 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms