RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ETV6P41212 452 aa17.43■□□□□ 0.38
LSM4-202ENST00000593564 HOXA1P49639 335 aaPredicted RBP17.43■□□□□ 0.38
LSM4-202ENST00000593564 OR4X1Q8NH49 305 aa17.43■□□□□ 0.38
LSM4-202ENST00000593564 METTL26Q96S19 204 aa17.43■□□□□ 0.38
LSM4-202ENST00000593564 FNDC4Q9H6D8 234 aaPredicted RBP17.43■□□□□ 0.38
LSM4-202ENST00000593564 MRPL36Q9P0J6 103 aaKnown RBP17.43■□□□□ 0.38
LSM4-202ENST00000593564 HECTD4Q9Y4D8 3996 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 CD3DP04234 171 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 TBPP20226 339 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 CRYBB3P26998 211 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 RPL5P46777 297 aaKnown RBP17.42■□□□□ 0.38
LSM4-202ENST00000593564 RORCP51449 518 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 TMEM41BQ5BJD5 291 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 RNASE12Q5GAN4 147 aaKnown RBP17.42■□□□□ 0.38
LSM4-202ENST00000593564 Q8NAQ8 132 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 GRAMD2BQ96HH9 432 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 ENY2Q9NPA8 101 aa17.42■□□□□ 0.38
LSM4-202ENST00000593564 FAM25AB3EWG3 89 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 FAM25CB3EWG5 89 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 FAM25GB3EWG6 89 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 K7EQG2 157 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 SCGB2A1O75556 95 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 GIG44P09565 113 aaPredicted RBP17.41■□□□□ 0.38
LSM4-202ENST00000593564 OPRK1P41145 380 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 TRIM16LQ309B1 348 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 BSXQ3C1V8 233 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 MZT2AQ6P582 158 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 TRPT1Q86TN4 253 aaKnown RBP17.41■□□□□ 0.38
LSM4-202ENST00000593564 STXBP6Q8NFX7 210 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 OR52I2Q8NH67 350 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 HRH4Q9H3N8 390 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 COPZ2Q9P299 210 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 MTFP1Q9UDX5 166 aa17.41■□□□□ 0.38
LSM4-202ENST00000593564 UCP1P25874 307 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 P2RY1P47900 373 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 PPP5CP53041 499 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 SP6Q3SY56 376 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 CCDC71LQ8N9Z2 235 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 ZFAND1Q8TCF1 268 aa17.4■□□□□ 0.38
LSM4-202ENST00000593564 RRNAD1Q96FB5 475 aaKnown RBP17.4■□□□□ 0.38
LSM4-202ENST00000593564 A0A0G2JRQ6 117 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 C11orf94C9JXX5 98 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 B3GALNT1O75752 331 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 IGKV1-17P01599 117 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 SPP1P10451 314 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 PRR20EP86478 221 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 PRR20CP86479 221 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 PRR20DP86480 221 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 PRR20BP86481 221 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 PRR20AP86496 221 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 MLANAQ16655 118 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 MORN3Q6PF18 240 aaPredicted RBP17.39■□□□□ 0.37
LSM4-202ENST00000593564 TERB2Q8NHR7 220 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 TMEM230Q96A57 120 aa17.39■□□□□ 0.37
LSM4-202ENST00000593564 NARS2Q96I59 477 aaKnown RBP17.39■□□□□ 0.37
LSM4-202ENST00000593564 AARDQ4LEZ3 155 aa17.38■□□□□ 0.37
LSM4-202ENST00000593564 OR4D10Q8NGI6 311 aa17.38■□□□□ 0.37
LSM4-202ENST00000593564 OR13C8Q8NGS7 320 aa17.38■□□□□ 0.37
LSM4-202ENST00000593564 DCANP1Q8TF63 244 aa17.38■□□□□ 0.37
LSM4-202ENST00000593564 AP3S1Q92572 193 aa17.38■□□□□ 0.37
LSM4-202ENST00000593564 TRAV30A0A087WSZ9 112 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 IGHV4-28A0A0C4DH34 117 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 CD74P04233 296 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 MIFP14174 115 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 Q6ZRM9 215 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 RNASE11Q8TAA1 199 aaKnown RBP17.37■□□□□ 0.37
LSM4-202ENST00000593564 EXTL2Q9UBQ6 330 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 APLNQ9ULZ1 77 aa17.37■□□□□ 0.37
LSM4-202ENST00000593564 RPS10-NUDT3A0A1W2PQS6 291 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 ZNF705EA8MWA4 302 aaPredicted RBP17.36■□□□□ 0.37
LSM4-202ENST00000593564 IGLL5B9A064 214 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 ZNF688P0C7X2 276 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 RBMY1A1P0DJD3 496 aaKnown RBP17.36■□□□□ 0.37
LSM4-202ENST00000593564 RBMY1CP0DJD4 496 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 C4BPBP20851 252 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 HTR2BP41595 481 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 SPCS3P61009 180 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 RBMY1FQ15415 496 aaKnown RBP17.36■□□□□ 0.37
LSM4-202ENST00000593564 TIGITQ495A1 244 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 FAM219AQ8IW50 185 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 TMEM229BQ8NBD8 167 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 OR52E5Q8NH55 327 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 ABHD1Q96SE0 405 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 U3KQE9 123 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 AGRNO00468 2067 aa17.36■□□□□ 0.37
LSM4-202ENST00000593564 KNCNA6PVL3 124 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 TAS2R19P59542 299 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 SCGB2B2Q4G0G5 96 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 C15orf40Q8WUR7 153 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 KRTAP17-1Q9BYP8 105 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 KIAA1109Q2LD37 5005 aa17.35■□□□□ 0.37
LSM4-202ENST00000593564 CDS2O95674 445 aa17.34■□□□□ 0.37
LSM4-202ENST00000593564 RAB3DO95716 219 aa17.34■□□□□ 0.37
LSM4-202ENST00000593564 ZNF182P17025 639 aaPredicted RBP17.34■□□□□ 0.37
LSM4-202ENST00000593564 EIF2B2P49770 351 aaKnown RBP17.34■□□□□ 0.37
LSM4-202ENST00000593564 MARCH1Q8TCQ1 289 aa17.34■□□□□ 0.37
LSM4-202ENST00000593564 TMEM222Q9H0R3 208 aa17.34■□□□□ 0.37
LSM4-202ENST00000593564 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.34■□□□□ 0.37
LSM4-202ENST00000593564 X6R8D5 127 aa17.34■□□□□ 0.37
LSM4-202ENST00000593564 HELTA6NFD8 242 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms