RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CCDC160A6NGH7 325 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 F8W735 103 aaPredicted RBP7.88□□□□□ -1.15
LIG3-212ENST00000590181 OR5AC1P0C628 307 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 SULT1A3P0DMM9 295 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 SULT1A4P0DMN0 295 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 SLC25A6P12236 298 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 ADMP35318 185 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 HOXA1P49639 335 aaPredicted RBP7.88□□□□□ -1.15
LIG3-212ENST00000590181 UBE2MP61081 183 aaKnown RBP7.88□□□□□ -1.15
LIG3-212ENST00000590181 BSXQ3C1V8 233 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 C2orf83Q53S99 150 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 UNQ9165/PRO28630Q6UXU0 137 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 C19orf35Q6ZS72 473 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 SELENOHQ8IZQ5 122 aaKnown RBP7.88□□□□□ -1.15
LIG3-212ENST00000590181 LGI3Q8N145 548 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 UBAC2Q8NBM4 344 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 OR4X1Q8NH49 305 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 NARS2Q96I59 477 aaKnown RBP7.88□□□□□ -1.15
LIG3-212ENST00000590181 SMPXQ9UHP9 88 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 KIR2DL5BA0A0G2JN68 375 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 KIR2DL5BA0A0G2JPC4 375 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 A0A1B0GU03 582 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 NAP1L6A6NFF2 107 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 JTBO76095 146 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 TMEM50AO95807 157 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 EIF2B2P49770 351 aaKnown RBP7.87□□□□□ -1.15
LIG3-212ENST00000590181 APOC4P55056 127 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 SP6Q3SY56 376 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 PYDC2Q56P42 97 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 TMEM268Q5VZI3 342 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 BTNL8Q6UX41 500 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 ZNF600Q6ZNG1 722 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 HAPLN4Q86UW8 402 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 KIR2DL5AQ8N109 375 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 TMEM116Q8NCL8 245 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 KIR2DL5BQ8NHK3 375 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 WDR89Q96FK6 387 aaPredicted RBP7.87□□□□□ -1.15
LIG3-212ENST00000590181 CHRDL1Q9BU40 450 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 C20orf24Q9BUV8 137 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 HEYLQ9NQ87 328 aaPredicted RBP7.87□□□□□ -1.15
LIG3-212ENST00000590181 MCUBQ9NWR8 336 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 PFDN2Q9UHV9 154 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 TP53TG1Q9Y2A0 90 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 S4R3C0 116 aa7.87□□□□□ -1.15
LIG3-212ENST00000590181 LOC102724200A0A096LPH7 203 aaPredicted RBP7.86□□□□□ -1.15
LIG3-212ENST00000590181 IGHV7-4-1A0A0J9YVY3 117 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 FAM90A26D6RGX4 464 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 CLN5O75503 358 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 DFFBO76075 338 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 YIF1AO95070 293 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 RNASE2P10153 161 aaKnown RBP7.86□□□□□ -1.15
LIG3-212ENST00000590181 TMEM187Q14656 261 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 SMCO1Q147U7 214 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 NMSQ5H8A3 153 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 Q6ZWC4 215 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 CCDC190Q86UF4 302 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 LRTM2Q8N967 370 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 PINX1Q96BK5 328 aaKnown RBP7.86□□□□□ -1.15
LIG3-212ENST00000590181 GGTLC1Q9BX51 225 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 SRD5A3Q9H8P0 318 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 EDA2RQ9HAV5 297 aa7.86□□□□□ -1.15
LIG3-212ENST00000590181 HERC2O95714 4834 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 CENPXA8MT69 81 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 CEBPZOSA8MTT3 80 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 CHEK1O14757 476 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 MED6O75586 246 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 CD7P09564 240 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 AKR1C4P17516 323 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 NPPCP23582 126 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 NUP62P37198 522 aaPredicted RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 OPRK1P41145 380 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 AP2S1P53680 142 aaPredicted RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 YPEL3P61236 119 aaPredicted RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 RPP30P78346 268 aaKnown RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 KLF9Q13886 244 aaPredicted RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 LINC00299Q6ZSB3 139 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 OR1S2Q8NGQ3 325 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 GRAMD2BQ96HH9 432 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 C7orf50Q9BRJ6 194 aaKnown RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 RHPN1-AS1Q9BWJ2 59 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 RBM38Q9H0Z9 239 aaKnown RBP7.85□□□□□ -1.15
LIG3-212ENST00000590181 VSIRQ9H7M9 311 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 HSPB7Q9UBY9 170 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 CACNG5Q9UF02 275 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 TMED3Q9Y3Q3 217 aa7.85□□□□□ -1.15
LIG3-212ENST00000590181 IGHV3-35A0A0C4DH35 117 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 SCAF4O95104 1147 aaKnown RBP7.84□□□□□ -1.15
LIG3-212ENST00000590181 FABP1P07148 127 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 ATF4P18848 351 aaPredicted RBP7.84□□□□□ -1.15
LIG3-212ENST00000590181 S100A7P31151 101 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 GPX4P36969 197 aaPredicted RBP7.84□□□□□ -1.15
LIG3-212ENST00000590181 INPP1P49441 399 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 TNFRSF9Q07011 255 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 RBMS2Q15434 407 aaKnown RBP7.84□□□□□ -1.15
LIG3-212ENST00000590181 FAAP20Q6NZ36 180 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 Q6ZRM9 215 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 WFDC3Q8IUB2 231 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 DEFB125Q8N687 156 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 SLC24A4Q8NFF2 622 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 CACNG8Q8WXS5 425 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms