RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 IFNA4P05014 189 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 RNASE2P10153 161 aaKnown RBP8.23□□□□□ -1.09
CLIP3-203ENST00000586457 RPL11P62913 178 aaKnown RBP8.23□□□□□ -1.09
CLIP3-203ENST00000586457 PAFAH1B2P68402 229 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 RPP30P78346 268 aaKnown RBP8.23□□□□□ -1.09
CLIP3-203ENST00000586457 CNPY1Q3B7I2 92 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 C11orf87Q6NUJ2 197 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 SBSPONQ8IVN8 264 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 Q8N1Y9 231 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 TMEM116Q8NCL8 245 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 SLC24A4Q8NFF2 622 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 C7orf50Q9BRJ6 194 aaKnown RBP8.23□□□□□ -1.09
CLIP3-203ENST00000586457 MLXQ9UH92 298 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 PAIP2BQ9ULR5 123 aaKnown RBP8.23□□□□□ -1.09
CLIP3-203ENST00000586457 U3KQ87 197 aa8.23□□□□□ -1.09
CLIP3-203ENST00000586457 ZNF785A8K8V0 405 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 SLC25A4P12235 298 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 EDN2P20800 178 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 FCGR2BP31994 310 aaPredicted RBP8.22□□□□□ -1.09
CLIP3-203ENST00000586457 UBE2MP61081 183 aaKnown RBP8.22□□□□□ -1.09
CLIP3-203ENST00000586457 RAB11AP62491 216 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 SUPT4H1P63272 117 aaKnown RBP8.22□□□□□ -1.09
CLIP3-203ENST00000586457 TNFRSF9Q07011 255 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 BAK1Q16611 211 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 C4orf46Q504U0 113 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 ADAMTSL5Q6ZMM2 481 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 ZNF600Q6ZNG1 722 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 TMEM61Q8N0U2 210 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 COQ8AQ8NI60 647 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 RNASEH2CQ8TDP1 164 aaKnown RBP8.22□□□□□ -1.09
CLIP3-203ENST00000586457 DTD1Q8TEA8 209 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 WWC2-AS2Q96NR7 200 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 TMEM231Q9H6L2 316 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 TMED3Q9Y3Q3 217 aa8.22□□□□□ -1.09
CLIP3-203ENST00000586457 OR4C46A6NHA9 309 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 A8MZ25 164 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 SFT2D2O95562 160 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 TMEM50AO95807 157 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 CD5P06127 495 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 HOXB5P09067 269 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 C8orf88P0DMB2 117 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 NPPCP23582 126 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 NPY1RP25929 384 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 ADMP35318 185 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 CMC4P56277 68 aaPredicted RBP8.21□□□□□ -1.1
CLIP3-203ENST00000586457 ATP5IP56385 69 aaPredicted RBP8.21□□□□□ -1.1
CLIP3-203ENST00000586457 C2orf83Q53S99 150 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 Q8WTZ3 238 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 SPAG8Q99932 426 aaPredicted RBP8.21□□□□□ -1.1
CLIP3-203ENST00000586457 RHPN1-AS1Q9BWJ2 59 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 RBKSQ9H477 322 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 SMPXQ9UHP9 88 aa8.21□□□□□ -1.1
CLIP3-203ENST00000586457 IGHV3-49A0A0A0MS15 119 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 IGHV7-4-1A0A0J9YVY3 117 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 A0A1W2PS18 150 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 DNASE2O00115 360 aaPredicted RBP8.2□□□□□ -1.1
CLIP3-203ENST00000586457 WRBO00258 174 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 CLN5O75503 358 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 NDUFB6O95139 128 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 CD7P09564 240 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 IL7P13232 177 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 PPP1R1AQ13522 171 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 AARDQ4LEZ3 155 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 NMSQ5H8A3 153 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 DEFB125Q8N687 156 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 OR4X1Q8NH49 305 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 S100ZQ8WXG8 99 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 ACY3Q96HD9 319 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 GRAMD2BQ96HH9 432 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 RCHY1Q96PM5 261 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 CIB3Q96Q77 187 aaPredicted RBP8.2□□□□□ -1.1
CLIP3-203ENST00000586457 METTL26Q96S19 204 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 SPATA25Q9BR10 227 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 SRD5A3Q9H8P0 318 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 C19orf73Q9NVV2 129 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 HSPB7Q9UBY9 170 aa8.2□□□□□ -1.1
CLIP3-203ENST00000586457 PUS1Q9Y606 427 aaKnown RBP eCLIP8.2□□□□□ -1.1
CLIP3-203ENST00000586457 IGKV3-7A0A075B6H7 116 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 FAM90A26D6RGX4 464 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 F8W735 103 aaPredicted RBP8.19□□□□□ -1.1
CLIP3-203ENST00000586457 TSPAN4O14817 238 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 FABP1P07148 127 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 SLC25A6P12236 298 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 TFPI2P48307 235 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 EIF2B2P49770 351 aaKnown RBP8.19□□□□□ -1.1
CLIP3-203ENST00000586457 MLANAQ16655 118 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 MZT2BQ6NZ67 158 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 TOMM20LQ6UXN7 152 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 LRTM2Q8N967 370 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 OR1S2Q8NGQ3 325 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 PFDN2Q9UHV9 154 aa8.19□□□□□ -1.1
CLIP3-203ENST00000586457 IGHV3OR16-13A0A075B7E8 117 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 IGHV3-74A0A0B4J1X5 117 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 C9orf170A2RU37 121 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 CHEK1O14757 476 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 OR4E1P0C645 316 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 OR10J1P30954 320 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 RND2P52198 227 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 HAGHQ16775 308 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 BSXQ3C1V8 233 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms