RNA–Protein interactions for RNA: ENST00000578469.1

SREBF1-218, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 588 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-218	ENST00000578469	F11R	Q9Y624	299 aa	Known RBP	13.47	□□□□□ -0.25
SREBF1-218	ENST00000578469	MAP1LC3B2	A6NCE7	125 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	CD5	P06127	495 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	RPL29	P47914	159 aa	Known RBP	13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	FAM120AOS	Q5T036	256 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	FAM122C	Q6P4D5	195 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	LCN15	Q6UWW0	184 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	MISP3	Q96FF7	219 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	RASL11B	Q9BPW5	248 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	MAP1LC3B	Q9GZQ8	125 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	MEGF9	Q9H1U4	602 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	SMDT1	Q9H4I9	107 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	TMEM231	Q9H6L2	316 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	CDC42EP3	Q9UKI2	254 aa		13.46	□□□□□ -0.25
SREBF1-218	ENST00000578469	WNK2	Q9Y3S1	2297 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469		A0A1W2PPV4	95 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	SSBP2	P81877	361 aa	Predicted RBP	13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	ZNF726P1	Q15940	193 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	MIC13	Q5XKP0	118 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	CCDC28A	Q8IWP9	274 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	RPP25L	Q8N5L8	163 aa	Known RBP	13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	ARPC1A	Q92747	370 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	ACY3	Q96HD9	319 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	CR1	P17927	2039 aa		13.45	□□□□□ -0.26
SREBF1-218	ENST00000578469	RBFOX3	A6NFN3	312 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	HAX1	O00165	279 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	IFNA1	P01562	189 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	IGHV4-38-2	P0DP08	117 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	DEFA4	P12838	97 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	OR10J1	P30954	320 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	CDC34	P49427	236 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	B2M	P61769	119 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	CX3CL1	P78423	397 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	CCL20	P78556	96 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	SRSF3	P84103	164 aa	Known RBP	13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	MLANA	Q16655	118 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	BRD3OS	Q6XYD6	125 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469		Q8N9W7	124 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	OR2T6	Q8NHC8	308 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469	SLC45A2	Q9UMX9	530 aa		13.44	□□□□□ -0.26
SREBF1-218	ENST00000578469		A0A0U1RQK1	487 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469		F8W036	122 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	TGFA	P01135	160 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	HLA-DRB1	P01911	266 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	APELA	P0DMC3	54 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	BPIFB3	P59826	476 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	ANK2	Q01484	3957 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	FBLN7	Q53RD9	439 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	STPG3	Q8N7X2	389 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	WNT10A	Q9GZT5	417 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	SLC25A22	Q9H936	323 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	CUBN	O60494	3623 aa		13.43	□□□□□ -0.26
SREBF1-218	ENST00000578469	SEC14L6	B5MCN3	397 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	YIF1A	O95070	293 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	CRYGC	P07315	174 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	FBP1	P09467	338 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	CTRB1	P17538	263 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRR20E	P86478	221 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRR20C	P86479	221 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRR20D	P86480	221 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRR20B	P86481	221 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRR20A	P86496	221 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	CTRB2	Q6GPI1	263 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	RBMS3	Q6XE24	437 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	THAP8	Q8NA92	274 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	NPIPB3	Q92617	1050 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	RAB24	Q969Q5	203 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	SEC11C	Q9BY50	192 aa		13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	FNDC4	Q9H6D8	234 aa	Predicted RBP	13.42	□□□□□ -0.26
SREBF1-218	ENST00000578469	NPIPB5	A8MRT5	1133 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	APOC3	P02656	99 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	SFTA3	P0C7M3	94 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	TAGLN2	P37802	199 aa	Known RBP	13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	RND2	P52198	227 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	MFAP2	P55001	183 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	FGF8	P55075	233 aa	Predicted RBP	13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	RHOB	P62745	196 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	PMS2P11	Q13670	270 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	HAGH	Q16775	308 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	KHDC3L	Q587J8	217 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	ZNF506	Q5JVG8	444 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	CYP2G1P	Q6ZSU1	146 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	SSX7	Q7RTT5	188 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	SLC25A33	Q9BSK2	321 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	C19orf24	Q9BVV8	132 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	SCRT1	Q9BWW7	348 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	GNG13	Q9P2W3	67 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	MOB4	Q9Y3A3	225 aa		13.41	□□□□□ -0.26
SREBF1-218	ENST00000578469	ZFP92	A6NM28	416 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	MT-CO2	P00403	227 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	LINC00869	P0C866	280 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	IGHV4-31	P0DP07	118 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	PPT1	P50897	306 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	SELENOT	P62341	195 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	TMEM249	Q2WGJ8	235 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	KLF17	Q5JT82	389 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	RBM14	Q96PK6	669 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	SSX3	Q99909	188 aa		13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	FAM103A1	Q9BTL3	118 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-218	ENST00000578469	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.39	□□□□□ -0.27	3e-6	■□□□□ 10.6

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