RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NPIPB3Q92617 1050 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 RITA1Q96K30 269 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 NDUFAF3Q9BU61 184 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 KAAG1Q9UBP8 84 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 ZNF835Q9Y2P0 537 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 TRBV9A0A0B4J1U6 114 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 SNURFLB1AK76 121 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 SCGB1D1O95968 90 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 GFRALQ6UXV0 394 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 ASCL5Q7RTU5 278 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 OR5AU1Q8NGC0 362 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 MRPL36Q9P0J6 103 aaKnown RBP18.37■□□□□ 0.53
VPS53-211ENST00000571805 ADGRG4Q8IZF6 3080 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 UBE2L3P68036 154 aaKnown RBP18.37■□□□□ 0.53
VPS53-211ENST00000571805 FXYD3Q14802 87 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 TMEM155Q4W5P6 130 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 SSX8Q7RTT4 187 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 BEND2Q8NDZ0 799 aa18.37■□□□□ 0.53
VPS53-211ENST00000571805 IGHV3-48P01763 117 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 TGIF2LXQ8IUE1 241 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 C11orf42Q8N5U0 333 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 THAP8Q8NA92 274 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 TPSG1Q9NRR2 321 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 PKDREJQ9NTG1 2253 aa18.36■□□□□ 0.53
VPS53-211ENST00000571805 TCRBV4S1A1TA0A5B7 111 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 SHISA9B4DS77 424 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 FSTL3O95633 263 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 SUB1P53999 127 aaKnown RBP eCLIP18.35■□□□□ 0.53
VPS53-211ENST00000571805 ZNF355PQ9NSJ1 428 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 NAGKQ9UJ70 344 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 ACACAQ13085 2346 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 VSTM5A8MXK1 200 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 SLC25A17O43808 307 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 COX7A2P2O60397 106 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 SERF1AO75920 110 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 PAFAH1B2P68402 229 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 Q0VG73 95 aa18.35■□□□□ 0.53
VPS53-211ENST00000571805 A0A1W2PPI3 338 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 E7EQL1 145 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 IGHV1-8P0DP01 117 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 PYYP10082 97 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 C10orf113Q5VZT2 155 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 DMRTC2Q8IXT2 367 aaPredicted RBP18.34■□□□□ 0.53
VPS53-211ENST00000571805 OR1L4Q8NGR5 311 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 POLR3KQ9Y2Y1 108 aaPredicted RBP18.34■□□□□ 0.53
VPS53-211ENST00000571805 MC5RP33032 325 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 VMA21Q3ZAQ7 101 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 CDC42EP3Q9UKI2 254 aa18.34■□□□□ 0.53
VPS53-211ENST00000571805 A0A1B0GV90 55 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 F2Z2F3 143 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 TAS2R60P59551 318 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 IBA57Q5T440 356 aaKnown RBP18.33■□□□□ 0.53
VPS53-211ENST00000571805 ZNF600Q6ZNG1 722 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 Q6ZWC4 215 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 LINC00479Q96M42 142 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 PAXXQ9BUH6 204 aa18.33■□□□□ 0.53
VPS53-211ENST00000571805 PIEZO2Q9H5I5 2752 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 SMIM27A0A1W2PRY6 76 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 PLXNB1O43157 2135 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 SPINK4O60575 86 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 TPPP2P59282 170 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 TMEM136Q6ZRR5 245 aa18.33■□□□□ 0.52
VPS53-211ENST00000571805 REG1AP05451 166 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 SNRPCP09234 159 aaKnown RBP18.32■□□□□ 0.52
VPS53-211ENST00000571805 MGST1P10620 155 aaKnown RBP18.32■□□□□ 0.52
VPS53-211ENST00000571805 DYNLRB1Q9NP97 96 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 CD33P20138 364 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 C1orf194Q5T5A4 169 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 RUSC1-AS1Q66K80 236 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 WDR73Q6P4I2 378 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 ZNF329Q86UD4 541 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 MISP3Q96FF7 219 aa18.32■□□□□ 0.52
VPS53-211ENST00000571805 DMXL2Q8TDJ6 3036 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 MT-ND6P03923 174 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 LGALS7P47929 136 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 TCL1AP56279 114 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 RANP62826 216 aaKnown RBP18.31■□□□□ 0.52
VPS53-211ENST00000571805 PVRIGQ6DKI7 326 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 BAGE3Q86Y29 109 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 BAGE2Q86Y30 109 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 FXYD5Q96DB9 178 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 C2orf88Q9BSF0 95 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 TMEM133Q9H2Q1 129 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 AMMECR1Q9Y4X0 333 aaPredicted RBP18.31■□□□□ 0.52
VPS53-211ENST00000571805 BPIFB3P59826 476 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 RPL19P84098 196 aaKnown RBP18.31■□□□□ 0.52
VPS53-211ENST00000571805 LBHQ53QV2 105 aaPredicted RBP18.31■□□□□ 0.52
VPS53-211ENST00000571805 NAT8BQ9UHF3 227 aa18.31■□□□□ 0.52
VPS53-211ENST00000571805 GVINP1Q7Z2Y8 2422 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 IGHV3-72A0A0B4J1Y9 119 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 IGLC7A0M8Q6 106 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 CRYGCP07315 174 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 SLC35B1P78383 322 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 NHLRC2Q8NBF2 726 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 SSUH2Q9Y2M2 353 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 C22orf46C9J442 243 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 ENSAO43768 121 aaKnown RBP18.3■□□□□ 0.52
VPS53-211ENST00000571805 PRR30Q53SZ7 412 aaPredicted RBP18.3■□□□□ 0.52
VPS53-211ENST00000571805 GNB4Q9HAV0 340 aa18.3■□□□□ 0.52
VPS53-211ENST00000571805 IGHV1-69-2A0A0G2JMI3 117 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms