RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CYB5R2Q6BCY4 276 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 CIARTQ8N365 385 aaPredicted RBP12.71□□□□□ -0.37
CIITA-204ENST00000570546 PIMREGQ9BSJ6 248 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 PRDM13Q9H4Q3 707 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 IGHV3-66A0A0C4DH42 116 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 C9JQL5 133 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 C20orf204Q6ZNR8 217 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 C1orf147Q96MC9 270 aaPredicted RBP12.71□□□□□ -0.37
CIITA-204ENST00000570546 Q6AWC8 147 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 LINC01551Q86U37 167 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 OR10W1Q8NGF6 305 aa12.71□□□□□ -0.37
CIITA-204ENST00000570546 ZNF324O75467 553 aaPredicted RBP12.7□□□□□ -0.38
CIITA-204ENST00000570546 PRB3Q04118 309 aaPredicted RBP12.7□□□□□ -0.38
CIITA-204ENST00000570546 ZCCHC24Q8N2G6 241 aaKnown RBP12.7□□□□□ -0.38
CIITA-204ENST00000570546 DERL1Q9BUN8 251 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 TMEM133Q9H2Q1 129 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 FOXL1Q12952 345 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 C18orf15Q96N68 181 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 PLSCR4Q9NRQ2 329 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 TRAV5A0A0B4J249 113 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 LOC107984156A0A0G2JMH3 177 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 FAM106AQ4KMX7 169 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 ARL17AQ8IVW1 177 aa12.7□□□□□ -0.38
CIITA-204ENST00000570546 PEF1Q9UBV8 284 aaKnown RBP12.7□□□□□ -0.38
CIITA-204ENST00000570546 TRAV3A0A0B4J244 114 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 DMRTA1Q5VZB9 504 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 IGHV3OR16-10A0A075B7F0 116 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 SELLP14151 372 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 ACTL10Q5JWF8 245 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 SPSB3Q6PJ21 355 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 ZNF257Q9Y2Q1 563 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 LINC00473A8K010 186 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 SNAI2O43623 268 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 FOXH1O75593 365 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 AREGP15514 252 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 Q6ZRM9 215 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 CEP290O15078 2479 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 IGHV3-49A0A0A0MS15 119 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 PPP1R27Q86WC6 154 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 HS3ST6Q96QI5 342 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 AHCTF1Q8WYP5 2266 aa12.69□□□□□ -0.38
CIITA-204ENST00000570546 HIST1H1AQ02539 215 aaPredicted RBP12.68□□□□□ -0.38
CIITA-204ENST00000570546 ERASQ7Z444 233 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 MDS2Q8NDY4 140 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 SEPSECSQ9HD40 501 aaKnown RBP12.68□□□□□ -0.38
CIITA-204ENST00000570546 TMEM160Q9NX00 188 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 RPUSD1Q9UJJ7 312 aaKnown RBP12.68□□□□□ -0.38
CIITA-204ENST00000570546 LAMTOR2Q9Y2Q5 125 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 NBR2O15453 112 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 CA1P00915 261 aaPredicted RBP12.68□□□□□ -0.38
CIITA-204ENST00000570546 COQ2Q96H96 371 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 GPR183P32249 361 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 DMRTA2Q96SC8 542 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 SMIM13P0DJ93 91 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 KLRB1Q12918 225 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 FER1L6-AS1Q8NA97 138 aa12.68□□□□□ -0.38
CIITA-204ENST00000570546 NEU4Q8WWR8 484 aaPredicted RBP12.68□□□□□ -0.38
CIITA-204ENST00000570546 PDLIM4P50479 330 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 FAM90A2PQ658T7 463 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 ORMDL3Q8N138 153 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 FAM186AA6NE01 2351 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 SDK2Q58EX2 2172 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 PLXND1Q9Y4D7 1925 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 TRGV3P03979 118 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 PVRIGQ6DKI7 326 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 IGHV3OR16-8A0A075B7F1 116 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 IGKV1-6A0A0C4DH72 117 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 C9JCJ5 164 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 H7C2G1 150 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 RNFT1Q5M7Z0 435 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 ST6GALNAC3Q8NDV1 305 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 PYY3Q5JQD4 70 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 TSKUQ8WUA8 353 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 TANC1Q9C0D5 1861 aa12.67□□□□□ -0.38
CIITA-204ENST00000570546 LGALS3P17931 250 aaKnown RBP12.66□□□□□ -0.38
CIITA-204ENST00000570546 C15orf62A8K5M9 175 aa12.66□□□□□ -0.38
CIITA-204ENST00000570546 IGKV3-15P01624 115 aa12.66□□□□□ -0.38
CIITA-204ENST00000570546 NTF4P34130 210 aa12.66□□□□□ -0.38
CIITA-204ENST00000570546 LINC00205P59089 165 aa12.66□□□□□ -0.38
CIITA-204ENST00000570546 RNF125Q96EQ8 232 aa12.66□□□□□ -0.38
CIITA-204ENST00000570546 ZNF585BQ52M93 769 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 SLC25A15Q9Y619 301 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 HELZP42694 1942 aaKnown RBP12.65□□□□□ -0.38
CIITA-204ENST00000570546 TRAV9-2A0A087WT02 112 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 NUDT10Q8NFP7 164 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 NUDT11Q96G61 164 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 THADAQ6YHU6 1953 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 TRAV8-6A0A0B4J262 113 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 NPIPB6E9PJ23 425 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 FAM74A4Q5TZK3 123 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 CLEC19AQ6UXS0 136 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 C8orf46Q8TAG6 207 aa12.65□□□□□ -0.38
CIITA-204ENST00000570546 C10orf55Q5SWW7 151 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 MLNRO43193 412 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 LINC00614P0C842 121 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 FAM159AQ6UWV7 190 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 LHFPL4Q7Z7J7 247 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 KIR2DL4Q99706 377 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 FOXC2Q99958 501 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 TICRRQ7Z2Z1 1910 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms