RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 CLEC7AQ9BXN2 247 aa8□□□□□ -1.13
VPS53-206ENST00000570359 RPH3ALQ9UNE2 315 aa8□□□□□ -1.13
VPS53-206ENST00000570359 FCN1O00602 326 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 CXorf1O96002 111 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 ORM2P19652 201 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 IL3RAP26951 378 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 GALR1P47211 349 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 HLA-DRB5Q30154 266 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 TMEM177Q53S58 311 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 GFI1BQ5VTD9 330 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 BEND2Q8NDZ0 799 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 ST6GALNAC6Q969X2 333 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 NDUFA4L2Q9NRX3 87 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 FKBP11Q9NYL4 201 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 KAAG1Q9UBP8 84 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 IGHV1-3A0A0C4DH29 117 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 DLL1O00548 723 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 CNIH1O95406 144 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 LINC00869P0C866 280 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 STAG3L2P0CL84 134 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 STAG3L3P0CL85 134 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 PYYP10082 97 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 PRRX1P54821 245 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 LCN2P80188 198 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 POU2AF1Q16633 256 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 LDLRAD2Q5SZI1 272 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 CYP2G1PQ6ZSU1 146 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 KIR3DL3Q8N743 410 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 NHLRC2Q8NBF2 726 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 TIMD4Q96H15 378 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 OR5B12Q96R08 314 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 SPOCK3Q9BQ16 436 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 PCGF1Q9BSM1 259 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 ZNF257Q9Y2Q1 563 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 CSMD2Q7Z408 3487 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 BUB1B-PAK6H3BSN5 160 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 C19orf84I3L1E1 186 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 TIMM23O14925 209 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 TOX4O94842 621 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 NUTF2P61970 127 aaKnown RBP7.99□□□□□ -1.13
VPS53-206ENST00000570359 CD69Q07108 199 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 PNRC1Q12796 327 aaPredicted RBP7.99□□□□□ -1.13
VPS53-206ENST00000570359 MMDQ15546 238 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 FBLN7Q53RD9 439 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 LEMD1Q68G75 181 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 SGK494Q96LW2 274 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 POLQO75417 2590 aa7.99□□□□□ -1.13
VPS53-206ENST00000570359 USP9XQ93008 2570 aaPredicted RBP7.98□□□□□ -1.13
VPS53-206ENST00000570359 A0A087WWC5 75 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 TMEM30BQ3MIR4 351 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 SSX8Q7RTT4 187 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 TMEM167AQ8TBQ9 72 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 RAB1CQ92928 201 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 NOL4LQ96MY1 436 aaPredicted RBP7.98□□□□□ -1.13
VPS53-206ENST00000570359 CBLN4Q9NTU7 201 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 TRBV20OR9-2A0A075B6H5 130 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 F6UZH7 168 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 SPINK4O60575 86 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 CRYBB3P26998 211 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 RPL27AP46776 148 aaKnown RBP7.98□□□□□ -1.13
VPS53-206ENST00000570359 OR5I1Q13606 314 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 C2orf83Q53S99 150 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 TMEM144Q7Z5S9 345 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 OR1B1Q8NGR6 318 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 OR4X1Q8NH49 305 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 VSTM2AQ8TAG5 236 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 FRZBQ92765 325 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 SLC25A33Q9BSK2 321 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 SLC45A2Q9UMX9 530 aa7.98□□□□□ -1.13
VPS53-206ENST00000570359 TMEM250H0YL14 139 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 SLC17A3O00476 420 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 COX7A2P2O60397 106 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 RPL29P47914 159 aaKnown RBP7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRSS8Q16651 343 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 BLNKQ8WV28 456 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 TMEM37Q8WXS4 190 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 CXorf65A6NEN9 183 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 LIPFP07098 398 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 SUMO1P63165 101 aaKnown RBP7.97□□□□□ -1.13
VPS53-206ENST00000570359 UBE2L3P68036 154 aaKnown RBP7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRR20EP86478 221 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRR20CP86479 221 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRR20DP86480 221 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRR20BP86481 221 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 PRR20AP86496 221 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 FBXL19-AS1Q494R0 122 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 KLF17Q5JT82 389 aaPredicted RBP7.97□□□□□ -1.13
VPS53-206ENST00000570359 CDPF1Q6NVV7 123 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 SSBP3Q9BWW4 388 aaPredicted RBP7.97□□□□□ -1.13
VPS53-206ENST00000570359 KCNIP2Q9NS61 270 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 FUT9Q9Y231 359 aa7.97□□□□□ -1.13
VPS53-206ENST00000570359 CELSR2Q9HCU4 2923 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 LOC105371242A0A075B767 164 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 IGHV3OR16-10A0A075B7F0 116 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 A0A1W2PN81 502 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 NCBP2LA6PVI3 153 aaKnown RBP7.96□□□□□ -1.13
VPS53-206ENST00000570359 B4DEV8 164 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BKO60814 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BJP06899 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 TRGC1P0CF51 173 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms