RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 EDA2RQ9HAV5 297 aa15.16■□□□□ 0.02
CLK3-225ENST00000569063 TRAV14DV4A0A0A6YYC5 116 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 IGHV7-4-1A0A0J9YVY3 117 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 CHEK1O14757 476 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 TMEM50AO95807 157 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 AKR1C4P17516 323 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 HTR2BP41595 481 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 TMEM116Q8NCL8 245 aa15.15■□□□□ 0.02
CLK3-225ENST00000569063 RHPN1-AS1Q9BWJ2 59 aa15.14■□□□□ 0.01
CLK3-225ENST00000569063 FNDC4Q9H6D8 234 aaPredicted RBP15.14■□□□□ 0.01
CLK3-225ENST00000569063 HEYLQ9NQ87 328 aaPredicted RBP15.14■□□□□ 0.01
CLK3-225ENST00000569063 PRR13Q9NZ81 148 aa15.14■□□□□ 0.01
CLK3-225ENST00000569063 KMT2CQ8NEZ4 4911 aaKnown RBP15.13■□□□□ 0.01
CLK3-225ENST00000569063 A0A0B4J2A0 478 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 SULT1A3P0DMM9 295 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 SULT1A4P0DMN0 295 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 ANXA3P12429 323 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 OPRK1P41145 380 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 MLANAQ16655 118 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 C2orf83Q53S99 150 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 NMSQ5H8A3 153 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 TOMM20LQ6UXN7 152 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 ZNF600Q6ZNG1 722 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 OR4X1Q8NH49 305 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 RNF2Q99496 336 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 SHPKQ9UHJ6 478 aa15.13■□□□□ 0.01
CLK3-225ENST00000569063 CEBPZOSA8MTT3 80 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 CLN5O75503 358 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 SRPXP78539 464 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 SPANXN2Q5MJ10 180 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 CASC10Q5T4H9 136 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 LYZL2Q7Z4W2 148 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 LGI3Q8N145 548 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 FAM110AQ9BQ89 295 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 GINS3Q9BRX5 216 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 ZFAND3Q9H8U3 227 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 RETNQ9HD89 108 aa15.12■□□□□ 0.01
CLK3-225ENST00000569063 MRPL36Q9P0J6 103 aaKnown RBP15.12■□□□□ 0.01
CLK3-225ENST00000569063 LOC102724200A0A096LPH7 203 aaPredicted RBP15.11■□□□□ 0.01
CLK3-225ENST00000569063 PIGBOS1A0A0B4J2F0 54 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 OR4C46A6NHA9 309 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 LYL1P12980 280 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 CCR6P51684 374 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 TMEM128Q5BJH2 165 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 SLC25A21Q9BQT8 299 aaPredicted RBP15.11■□□□□ 0.01
CLK3-225ENST00000569063 GGTLC1Q9BX51 225 aa15.11■□□□□ 0.01
CLK3-225ENST00000569063 PUS1Q9Y606 427 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLK3-225ENST00000569063 IGHV3-49A0A0A0MS15 119 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 A0A1B0GU03 582 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 RPS10-NUDT3A0A1W2PQS6 291 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 SMCO1Q147U7 214 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 FAM90A2PQ658T7 463 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 TMED4Q7Z7H5 227 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 SLC24A4Q8NFF2 622 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 RNASEH2CQ8TDP1 164 aaKnown RBP15.1■□□□□ 0.01
CLK3-225ENST00000569063 SRRQ9GZT4 340 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 HSPB7Q9UBY9 170 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 UBQLN2Q9UHD9 624 aa15.1■□□□□ 0.01
CLK3-225ENST00000569063 TRAV30A0A087WSZ9 112 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 SCGB2A1O75556 95 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 CD5P06127 495 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 BMI1P35226 326 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 TNFRSF9Q07011 255 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 ODF3L2Q3SX64 289 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 TMEM170AQ8WVE7 144 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 VSIRQ9H7M9 311 aa15.09■□□□□ 0.01
CLK3-225ENST00000569063 DUXBA0A1W2PPF3 345 aa15.08■□□□□ 0
CLK3-225ENST00000569063 NXPH3O95157 252 aa15.08■□□□□ 0
CLK3-225ENST00000569063 SLC25A4P12235 298 aa15.08■□□□□ 0
CLK3-225ENST00000569063 NOXA1Q86UR1 476 aa15.08■□□□□ 0
CLK3-225ENST00000569063 NBEAL2Q6ZNJ1 2754 aa15.07■□□□□ 0
CLK3-225ENST00000569063 IGHV3OR16-13A0A075B7E8 117 aa15.07■□□□□ 0
CLK3-225ENST00000569063 IGHV3-74A0A0B4J1X5 117 aa15.07■□□□□ 0
CLK3-225ENST00000569063 IGKV1-17P01599 117 aa15.07■□□□□ 0
CLK3-225ENST00000569063 APOHP02749 345 aaPredicted RBP15.07■□□□□ 0
CLK3-225ENST00000569063 NPY1RP25929 384 aa15.07■□□□□ 0
CLK3-225ENST00000569063 PRSS54Q6PEW0 395 aa15.07■□□□□ 0
CLK3-225ENST00000569063 LRTM2Q8N967 370 aa15.07■□□□□ 0
CLK3-225ENST00000569063 ST8SIA2Q92186 375 aa15.07■□□□□ 0
CLK3-225ENST00000569063 U3KQ87 197 aa15.07■□□□□ 0
CLK3-225ENST00000569063 DNAH7Q8WXX0 4024 aa15.07■□□□□ 0
CLK3-225ENST00000569063 NPPCP23582 126 aa15.06■□□□□ 0
CLK3-225ENST00000569063 CMC4P56277 68 aaPredicted RBP15.06■□□□□ 0
CLK3-225ENST00000569063 ETFRF1Q6IPR1 90 aa15.06■□□□□ 0
CLK3-225ENST00000569063 DTD1Q8TEA8 209 aa15.06■□□□□ 0
CLK3-225ENST00000569063 RBKSQ9H477 322 aa15.06■□□□□ 0
CLK3-225ENST00000569063 PITX3O75364 302 aa15.05■□□□□ -0
CLK3-225ENST00000569063 IGLC1P0CG04 106 aa15.05■□□□□ -0
CLK3-225ENST00000569063 BAK1Q16611 211 aa15.05■□□□□ -0
CLK3-225ENST00000569063 TIGITQ495A1 244 aa15.05■□□□□ -0
CLK3-225ENST00000569063 TCF24Q7RTU0 167 aa15.05■□□□□ -0
CLK3-225ENST00000569063 LILRB2Q8N423 598 aa15.05■□□□□ -0
CLK3-225ENST00000569063 OR1S2Q8NGQ3 325 aa15.05■□□□□ -0
CLK3-225ENST00000569063 SFT2D2O95562 160 aa15.04■□□□□ -0
CLK3-225ENST00000569063 IFNA10P01566 189 aa15.04■□□□□ -0
CLK3-225ENST00000569063 SLC25A6P12236 298 aa15.04■□□□□ -0
CLK3-225ENST00000569063 VAMP1P23763 118 aa15.04■□□□□ -0
CLK3-225ENST00000569063 CRYBB3P26998 211 aa15.04■□□□□ -0
CLK3-225ENST00000569063 RND2P52198 227 aa15.04■□□□□ -0
CLK3-225ENST00000569063 APOC4P55056 127 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms