RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TMEM136Q6ZRR5 245 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 WFDC8Q8IUA0 241 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 STPG4Q8N801 248 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 SELENOKQ9Y6D0 94 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 IGKV1OR2-108A0A075B7D4 117 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 LOXL3P58215 753 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 TNXAQ16473 311 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 OR52E5Q8NH55 327 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 PMCHL2Q9BQD1 86 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 LSM4Q9Y4Z0 139 aaKnown RBP11.85□□□□□ -0.51
VPS35-210ENST00000568784 A0A1W2PRD5 423 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 A0A1W2PRF3 423 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 A0A1W2PRM7 423 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 PGPA6NDG6 321 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 C9JCJ5 164 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 SELENOTP62341 195 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 FAM90A1Q86YD7 464 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 MRPL20Q9BYC9 149 aaKnown RBP11.85□□□□□ -0.51
VPS35-210ENST00000568784 SAP30LQ9HAJ7 183 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 HIGD1CA8MV81 97 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 FLYWCH2Q96CP2 140 aaKnown RBP11.84□□□□□ -0.51
VPS35-210ENST00000568784 CLEC7AQ9BXN2 247 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 TRAV17A0A0B4J275 112 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 TEX50A0A1B0GTY4 177 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 CORTO00230 105 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 PAX1P15863 534 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 TSKUQ8WUA8 353 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 PGLYRP4Q96LB8 373 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 RBM14Q96PK6 669 aaKnown RBP11.84□□□□□ -0.51
VPS35-210ENST00000568784 ISLRO14498 428 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 SLC25A17O43808 307 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 SSBP2P81877 361 aaPredicted RBP11.84□□□□□ -0.51
VPS35-210ENST00000568784 ADTRPQ96IZ2 230 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 OSTCQ9NRP0 149 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 BET1LQ9NYM9 111 aa11.84□□□□□ -0.51
VPS35-210ENST00000568784 COLQQ9Y215 455 aaPredicted RBP11.84□□□□□ -0.51
VPS35-210ENST00000568784 PRR33A8MZF0 331 aa11.83□□□□□ -0.51
VPS35-210ENST00000568784 PDPNQ86YL7 162 aa11.83□□□□□ -0.51
VPS35-210ENST00000568784 RPRMLQ8N4K4 120 aa11.83□□□□□ -0.51
VPS35-210ENST00000568784 DEFB123Q8N688 67 aa11.83□□□□□ -0.51
VPS35-210ENST00000568784 TP73-AS1Q9UF72 201 aa11.83□□□□□ -0.51
VPS35-210ENST00000568784 CHEK1O14757 476 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 HYPMO75409 117 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 BPIFB3P59826 476 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 ASCL2Q99929 193 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 TRBV9A0A0B4J1U6 114 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 SPAARA0A1B0GVQ0 90 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 CBY3A6NI87 242 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 UPK2O00526 184 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 OR1L8Q8NGR8 309 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 C1orf159Q96HA4 380 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 HSBP1L1C9JCN9 74 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 PLGLAQ15195 96 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 C19orf35Q6ZS72 473 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 SLC25A33Q9BSK2 321 aa11.83□□□□□ -0.52
VPS35-210ENST00000568784 Q0VG73 95 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 OR4C5Q8NGB2 326 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 TMEM14BQ9NUH8 114 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 FOXA2Q9Y261 457 aaPredicted RBP11.82□□□□□ -0.52
VPS35-210ENST00000568784 hADV38S2A0JD32 116 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 ZNF891A8MT65 544 aaPredicted RBP11.82□□□□□ -0.52
VPS35-210ENST00000568784 SNAI2O43623 268 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRR20EP86478 221 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRR20CP86479 221 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRR20DP86480 221 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRR20BP86481 221 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRR20AP86496 221 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 FAM27E3Q08E93 113 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 C17orf58Q2M2W7 97 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 LINC00305Q7Z4B0 112 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 SFXN3Q9BWM7 321 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 WASHC3Q9Y3C0 194 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 CD59P13987 128 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 PRCDQ00LT1 54 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 SSX8Q7RTT4 187 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 NUDT10Q8NFP7 164 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 C22orf15Q8WYQ4 148 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 NUDT11Q96G61 164 aa11.82□□□□□ -0.52
VPS35-210ENST00000568784 MGAQ8IWI9 3026 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 TRAV9-1A0A075B6T8 112 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 TRGV8A0A0C4DH27 118 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 IZUMO1RA6ND01 250 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 PEX7O00628 323 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 TBR1Q16650 682 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 ETFRF1Q6IPR1 90 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 DSCAMO60469 2012 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 CT45A6P0DMU7 189 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 CT45A5P0DMU8 189 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 CT45A7P0DMV0 189 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 ZNF138P52744 262 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 DLX1P56177 255 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 CD69Q07108 199 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 NKX6-3A6NJ46 265 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 PRSS46E5RG02 174 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 IGLC2P0DOY2 106 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 IGLC3P0DOY3 106 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 PRRX1P54821 245 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 DEFB124Q8NES8 71 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 C18orf32Q8TCD1 76 aa11.81□□□□□ -0.52
VPS35-210ENST00000568784 SPRY4Q9C004 299 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms