RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IGHG1P01857 330 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 H2BFMP0C1H6 154 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 CECR9P0C854 216 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 SP9P0CG40 484 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 FGF6P10767 208 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 AQP1P29972 269 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 OPRK1P41145 380 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TNFRSF4P43489 277 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 INSL3P51460 131 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMEM258P61165 79 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 RPS11P62280 158 aaKnown RBP eCLIP2.61□□□□□ -1.99
VPS35-208ENST00000568612 RPS24P62847 133 aaKnown RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 ZNF117Q03924 483 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 CXCL9Q07325 125 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 FAM27E3Q08E93 113 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ZNF141Q15928 474 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 CEACAM16Q2WEN9 425 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 LINC01620Q4KN68 170 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 Q56UQ5 140 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 DMRTC1Q5HYR2 192 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 IBA57Q5T440 356 aaKnown RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 C9orf153Q5TBE3 101 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 PMS2CLQ68D20 193 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 LCN12Q6JVE5 192 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 FBXL22Q6P050 247 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 SLC25A47Q6Q0C1 308 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMEM207Q6UWW9 146 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 AMTNQ6UX39 209 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ZNF841Q6ZN19 808 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 Q6ZS49 121 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 SH2D6Q7Z4S9 175 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ANKRD37Q7Z713 158 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 HAPLN4Q86UW8 402 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 HOGA1Q86XE5 327 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 STHQ8IWL8 128 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 SUMF1Q8NBK3 374 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 OR10G8Q8NGN5 311 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 RNF128Q8TEB7 428 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ZNF721Q8TF20 911 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 GTSF1Q8WW33 167 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMEM230Q96A57 120 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 PLEKHB2Q96CS7 222 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMEM70Q9BUB7 260 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 GNB1LQ9BYB4 327 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 PLA2G12AQ9BZM1 189 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ULBP3Q9BZM4 244 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 PBOV1Q9GZY1 135 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMEM222Q9H0R3 208 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 JPT2Q9H910 190 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 C21orf62Q9NYP8 219 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 GNG13Q9P2W3 67 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 KLK13Q9UKR3 277 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 ANAPC10Q9UM13 185 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TMED7Q9Y3B3 224 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 KLF12Q9Y4X4 402 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 MPC1Q9Y5U8 109 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 KCNE3Q9Y6H6 103 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 GREB1LQ9C091 1923 aaPredicted RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 KCPQ6ZWJ8 1503 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TRIP12Q14669 1992 aaPredicted RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 DOCK4Q8N1I0 1966 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 MYO16Q9Y6X6 1858 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 SCN5AQ14524 2016 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TRAV18A0A075B6X5 111 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 IGLV5-52A0A0A0MRZ9 124 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 CCL15-CCL14A0A0B4J2E2 113 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FAM236DA0A1B0GTK5 79 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 A0A1B0GWB2 263 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LOC107986453A0A1B0GWG9 222 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 hDV102S1A0JD36 115 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 MED19A0JLT2 244 aaPredicted RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 C5orf49A4QMS7 147 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ZFP92A6NM28 416 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 SHISA9B4DS77 424 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TMEM178BH3BS89 294 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 M0R2P5 195 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 UQCRQO14949 82 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PIN1P1O15428 100 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ANGPTL7O43827 346 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 MPDU1O75352 247 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 DUSP14O95147 198 aaKnown RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 APCSP02743 223 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 P04436 131 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LGALS2P05162 132 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FGF1P05230 155 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ATP5G1P05496 136 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ZNF688P0C7X2 276 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FAM236CP0DP71 79 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 CBLN1P23435 193 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 SFTPDP35247 375 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ATP5G3P48201 142 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PSMB3P49720 205 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 CCL11P51671 97 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LIM2P55344 173 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 RPS4XP62701 263 aaKnown RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 SP4Q02446 784 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 CD164Q04900 197 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 EIF3IQ13347 325 aaKnown RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 NMSQ5H8A3 153 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 KLF17Q5JT82 389 aaPredicted RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms