RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 AGRNO00468 2067 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 CD5P06127 495 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 NANOS2P60321 138 aaKnown RBP10.93□□□□□ -0.66
CLN3-236ENST00000568558 PAFAH1B2P68402 229 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 ERHP84090 104 aaKnown RBP10.93□□□□□ -0.66
CLN3-236ENST00000568558 SCGB2B2Q4G0G5 96 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 OR4C16Q8NGL9 310 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 C11orf45Q8TAV5 145 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 ST8SIA2Q92186 375 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 MFFQ9GZY8 342 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 VSIRQ9H7M9 311 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 ZFAND3Q9H8U3 227 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 HERC2O95714 4834 aa10.93□□□□□ -0.66
CLN3-236ENST00000568558 ANKRD20A5PA0PJZ0 165 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 ST8SIA3O43173 380 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 CA1P00915 261 aaPredicted RBP10.92□□□□□ -0.66
CLN3-236ENST00000568558 APOHP02749 345 aaPredicted RBP10.92□□□□□ -0.66
CLN3-236ENST00000568558 NPBWR1P48145 328 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 RBMS2Q15434 407 aaKnown RBP10.92□□□□□ -0.66
CLN3-236ENST00000568558 ZNF79Q15937 498 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 IZUMO4Q1ZYL8 232 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 SPINK9Q5DT21 86 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 LILRB2Q8N423 598 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 OR13C8Q8NGS7 320 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 TERB2Q8NHR7 220 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 MARCH1Q8TCQ1 289 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 MS4A6AQ9H2W1 248 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 RABL2AQ9UBK7 228 aaPredicted RBP10.92□□□□□ -0.66
CLN3-236ENST00000568558 FBXL17Q9UF56 701 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 RABL2BQ9UNT1 228 aa10.92□□□□□ -0.66
CLN3-236ENST00000568558 TRAV2A0A0B4J234 112 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 DFFBO76075 338 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 AKAIN1P0CW23 69 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 PIGPP57054 158 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 RND3P61587 244 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 MEF2DQ14814 521 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 LEMD1Q68G75 181 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 ZNF600Q6ZNG1 722 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 CCDC190Q86UF4 302 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 FAM24BQ8N5W8 94 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 DUSP18Q8NEJ0 188 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 TRIM63Q969Q1 353 aa10.91□□□□□ -0.66
CLN3-236ENST00000568558 PUS1Q9Y606 427 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLN3-236ENST00000568558 IGHV3-66A0A0C4DH42 116 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 A0A1B0GU03 582 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 INS-IGF2F8WCM5 200 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 DNASE2O00115 360 aaPredicted RBP10.9□□□□□ -0.66
CLN3-236ENST00000568558 TMEM50AO95807 157 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 IGKV1-5P01602 117 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 IFNA4P05014 189 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 P0C879 139 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 DEFB131AP59861 70 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 TMEM187Q14656 261 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 PYDC2Q56P42 97 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 PVRIGQ6DKI7 326 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 OR51S1Q8NGJ8 323 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 TP53RKQ96S44 253 aa10.9□□□□□ -0.66
CLN3-236ENST00000568558 DNAH2Q9P225 4427 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 DISC1C4P0D8 188 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 DEFB4AO15263 64 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 S100A5P33763 92 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 SNCAP37840 140 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 AKR1C2P52895 323 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 SP6Q3SY56 376 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 SLC35G3Q8N808 338 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 ZNF486Q96H40 463 aaPredicted RBP10.89□□□□□ -0.67
CLN3-236ENST00000568558 RTBDNQ9BSG5 229 aaPredicted RBP10.89□□□□□ -0.67
CLN3-236ENST00000568558 TMEM231Q9H6L2 316 aa10.89□□□□□ -0.67
CLN3-236ENST00000568558 A0A0B4J293 547 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 CORTO00230 105 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 RNASE2P10153 161 aaKnown RBP10.88□□□□□ -0.67
CLN3-236ENST00000568558 TCTAP57738 103 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 RPL11P62913 178 aaKnown RBP10.88□□□□□ -0.67
CLN3-236ENST00000568558 KLF9Q13886 244 aaPredicted RBP10.88□□□□□ -0.67
CLN3-236ENST00000568558 ZFAND1Q8TCF1 268 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 C2CD4CQ8TF44 421 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 KRTAP17-1Q9BYP8 105 aa10.88□□□□□ -0.67
CLN3-236ENST00000568558 MRPL36Q9P0J6 103 aaKnown RBP10.88□□□□□ -0.67
CLN3-236ENST00000568558 C3orf85A0A1B0GTC6 90 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 IFNA17P01571 189 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 ETV6P41212 452 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 SUB1P53999 127 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLN3-236ENST00000568558 PRR20EP86478 221 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 PRR20CP86479 221 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 PRR20DP86480 221 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 PRR20BP86481 221 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 PRR20AP86496 221 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 STHQ8IWL8 128 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 Q8NAQ8 132 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 PDCD10Q9BUL8 212 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 SRRQ9GZT4 340 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 FNDC4Q9H6D8 234 aaPredicted RBP10.87□□□□□ -0.67
CLN3-236ENST00000568558 MCUBQ9NWR8 336 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 COPZ2Q9P299 210 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 RABAC1Q9UI14 185 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 DNAH17Q9UFH2 4485 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 FAT2Q9NYQ8 4349 aa10.87□□□□□ -0.67
CLN3-236ENST00000568558 A0A1W2PS18 150 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 K7EQG2 157 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 CLN5O75503 358 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms