RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SPCS3P61009 180 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 THOC7Q6I9Y2 204 aaKnown RBP10.49□□□□□ -0.73
CLN3-235ENST00000568497 LYG2Q86SG7 212 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 UXS1Q8NBZ7 420 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 S100ZQ8WXG8 99 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 IL22RA2Q969J5 263 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 TM2D3Q9BRN9 247 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 C20orf24Q9BUV8 137 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 BATF3Q9NR55 127 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 NUDT15Q9NV35 164 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 TRBV7-1A0A0A6YYK4 115 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 TMEM213A2RRL7 107 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 C2orf70A6NJV1 201 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 TNFRSF9Q07011 255 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 VN1R17PQ8TDU5 208 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 CXorf58Q96LI9 332 aa10.48□□□□□ -0.73
CLN3-235ENST00000568497 C7orf50Q9BRJ6 194 aaKnown RBP10.48□□□□□ -0.73
CLN3-235ENST00000568497 PAIP2BQ9ULR5 123 aaKnown RBP10.48□□□□□ -0.73
CLN3-235ENST00000568497 IGHV3-66A0A0C4DH42 116 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 FAM240BA0A1B0GVZ2 78 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 H3BP45 60 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 PITX3O75364 302 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 H2AFB2P0C5Z0 115 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 FOLR2P14207 255 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 INSL3P51460 131 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 CD300EQ496F6 205 aaPredicted RBP10.47□□□□□ -0.73
CLN3-235ENST00000568497 GSG1LQ6UXU4 331 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 HSD17B13Q7Z5P4 300 aaPredicted RBP10.47□□□□□ -0.73
CLN3-235ENST00000568497 ZNF114Q8NC26 417 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 OR10C1Q96KK4 312 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 ELOVL1Q9BW60 279 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 WDR12Q9GZL7 423 aaKnown RBP10.47□□□□□ -0.73
CLN3-235ENST00000568497 WFDC10AQ9H1F0 79 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 THYN1Q9P016 225 aa10.47□□□□□ -0.73
CLN3-235ENST00000568497 SCGB1D2O95969 90 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 IGLV1-51P01701 117 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 CTSGP08311 255 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 GP9P14770 177 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 OPRK1P41145 380 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 MFAP4P55083 255 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 ASAH1Q13510 395 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 TIGITQ495A1 244 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 AARDQ4LEZ3 155 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 BTNL8Q6UX41 500 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 NRARPQ7Z6K4 114 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 SLC24A4Q8NFF2 622 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 DTD1Q8TEA8 209 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 DEDD2Q8WXF8 326 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 WDR89Q96FK6 387 aaPredicted RBP10.46□□□□□ -0.73
CLN3-235ENST00000568497 HSPB7Q9UBY9 170 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 MLXQ9UH92 298 aa10.46□□□□□ -0.73
CLN3-235ENST00000568497 A0A1B0GU03 582 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 WRBO00258 174 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 CCNKO75909 580 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 YIF1AO95070 293 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 IFNA10P01566 189 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 POLR2GP62487 172 aaKnown RBP eCLIP10.45□□□□□ -0.74
CLN3-235ENST00000568497 SRPXP78539 464 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 BSXQ3C1V8 233 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 LRTM2Q8N967 370 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 OR52E5Q8NH55 327 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 DYNLRB2Q8TF09 96 aa10.45□□□□□ -0.74
CLN3-235ENST00000568497 FAM25EA8MYX2 175 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 CYB5BO43169 146 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 SCAF4O95104 1147 aaKnown RBP10.44□□□□□ -0.74
CLN3-235ENST00000568497 APOHP02749 345 aaPredicted RBP10.44□□□□□ -0.74
CLN3-235ENST00000568497 CBLN1P23435 193 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 NPY1RP25929 384 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 TATDN3Q17R31 274 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 PVRIGQ6DKI7 326 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 GPHB5Q86YW7 130 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 COQ8AQ8NI60 647 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 ACY3Q96HD9 319 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 ZNF436Q9C0F3 470 aaPredicted RBP10.44□□□□□ -0.74
CLN3-235ENST00000568497 GSKIPQ9P0R6 139 aa10.44□□□□□ -0.74
CLN3-235ENST00000568497 IGKV3-7A0A075B6H7 116 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 C15orf62A8K5M9 175 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 INS-IGF2F8WCM5 200 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 GNG7O60262 68 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 SIX6O95475 246 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 TMEM50AO95807 157 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 LY6G6CO95867 125 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 RND2P52198 227 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 GUCA2BQ16661 112 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 DEFB114Q30KQ6 69 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 FAM106AQ4KMX7 169 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 IL17DQ8TAD2 202 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 ENKURQ8TC29 256 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 TMEM190Q8WZ59 177 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 BSCL2Q96G97 398 aaPredicted RBP10.43□□□□□ -0.74
CLN3-235ENST00000568497 SPATA25Q9BR10 227 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 PEMTQ9UBM1 199 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 TMED3Q9Y3Q3 217 aa10.43□□□□□ -0.74
CLN3-235ENST00000568497 ZNF785A8K8V0 405 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 NUPL2O15504 423 aaKnown RBP10.42□□□□□ -0.74
CLN3-235ENST00000568497 SSSCA1O60232 199 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 CD7P09564 240 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 HTR2BP41595 481 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 SUB1P53999 127 aaKnown RBP eCLIP10.42□□□□□ -0.74
CLN3-235ENST00000568497 C2orf83Q53S99 150 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms