RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ARHGAP32A7KAX9 2087 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TCRBV4S1A1TA0A5B7 111 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 OR7C2O60412 319 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TRGC1P0CF51 173 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 HOXA5P20719 270 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 S100PP25815 95 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 UQCRFS1P47985 274 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 FAM167A-AS1Q96KT0 104 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 SRD5A3Q9H8P0 318 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TRAV5A0A0B4J249 113 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TEX22C9J3V5 150 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TGOLN2O43493 480 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 CRYGCP07315 174 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 OR10J4P0C629 311 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 C8orf88P0DMB2 117 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 CD99P14209 185 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 TPTE2P1Q5T6R2 138 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 PATE2Q6UY27 113 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 OR11H6Q8NGC7 330 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 SSBP3Q9BWW4 388 aaPredicted RBP16.22■□□□□ 0.19
CLN3-230ENST00000568076 SLC25A2Q9BXI2 301 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 DNAJC4Q9NNZ3 241 aa16.22■□□□□ 0.19
CLN3-230ENST00000568076 LOC105371242A0A075B767 164 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 FCN1O00602 326 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 TIMM23O14925 209 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 S100A8P05109 93 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 LGALS4P56470 323 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 TAS2R45P59539 299 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 KLRD1Q13241 179 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 OCC1Q8TAD7 63 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 IGFBPL1Q8WX77 278 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 MISP3Q96FF7 219 aa16.21■□□□□ 0.19
CLN3-230ENST00000568076 MRPL32Q9BYC8 188 aaKnown RBP16.21■□□□□ 0.19
CLN3-230ENST00000568076 A0A1W2PPQ1 181 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 IFITM10A6NMD0 228 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 GGCTO75223 188 aaKnown RBP16.2■□□□□ 0.18
CLN3-230ENST00000568076 NDUFS7O75251 213 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 CDKN1AP38936 164 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 C4orf17Q53FE4 359 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 UHRF2Q96PU4 802 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 HNF1AP20823 631 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 SRP14P37108 136 aaKnown RBP16.2■□□□□ 0.18
CLN3-230ENST00000568076 ITLN2Q8WWU7 325 aaPredicted RBP16.2■□□□□ 0.18
CLN3-230ENST00000568076 SFRP2Q96HF1 295 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 DMRT1Q9Y5R6 373 aa16.2■□□□□ 0.18
CLN3-230ENST00000568076 GGTLC3B5MD39 225 aa16.19■□□□□ 0.18
CLN3-230ENST00000568076 M0R1W7 72 aa16.19■□□□□ 0.18
CLN3-230ENST00000568076 HTR1DP28221 377 aa16.19■□□□□ 0.18
CLN3-230ENST00000568076 LHFPL4Q7Z7J7 247 aa16.19■□□□□ 0.18
CLN3-230ENST00000568076 MRPL41Q8IXM3 137 aaKnown RBP16.19■□□□□ 0.18
CLN3-230ENST00000568076 RNF5Q99942 180 aa16.19■□□□□ 0.18
CLN3-230ENST00000568076 PCP4L1A6NKN8 68 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 ODF3BA8MYP8 253 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 K7EN84 100 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 CDX1P47902 265 aaPredicted RBP16.18■□□□□ 0.18
CLN3-230ENST00000568076 FAM3BP58499 235 aaPredicted RBP16.18■□□□□ 0.18
CLN3-230ENST00000568076 OR2T10Q8NGZ9 312 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 OR1P1Q8NH06 330 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 OR4X1Q8NH49 305 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 CFHR4Q92496 578 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 RNF2Q99496 336 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 DPM3Q9P2X0 92 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 HILPDAQ9Y5L2 63 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 IGHV3-21A0A0B4J1V1 117 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 COX7A2P2O60397 106 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 MOSP00540 346 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 CRYBB3P26998 211 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 ETFRF1Q6IPR1 90 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 OR5AU1Q8NGC0 362 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 SRSF12Q8WXF0 261 aaKnown RBP16.18■□□□□ 0.18
CLN3-230ENST00000568076 ZNF355PQ9NSJ1 428 aa16.18■□□□□ 0.18
CLN3-230ENST00000568076 SPTBN1Q01082 2364 aaKnown RBP16.18■□□□□ 0.18
CLN3-230ENST00000568076 C9JCJ5 164 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 PPP5D1E7EU14 171 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 GNLYP22749 145 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 PRTN3P24158 256 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 SELENOTP62341 195 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 FBLN7Q53RD9 439 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 GFI1BQ5VTD9 330 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 C10orf113Q5VZT2 155 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 F11RQ9Y624 299 aaKnown RBP16.17■□□□□ 0.18
CLN3-230ENST00000568076 MDFIC2A0A1B0GVS7 189 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 C19orf84I3L1E1 186 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 PPP1R2P9O14990 202 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 SMIM6P0DI80 62 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 TEX38Q6PEX7 206 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 OR1L4Q8NGR5 311 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 PFDN5Q99471 154 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 TNFRSF19Q9NS68 423 aa16.17■□□□□ 0.18
CLN3-230ENST00000568076 A0A1W2PRD5 423 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 A0A1W2PRF3 423 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 A0A1W2PRM7 423 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 ZFP36P26651 326 aaKnown RBP16.16■□□□□ 0.18
CLN3-230ENST00000568076 GPR6P46095 362 aaPredicted RBP16.16■□□□□ 0.18
CLN3-230ENST00000568076 MMDQ15546 238 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 TMEM116Q8NCL8 245 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 EAF1Q96JC9 268 aaPredicted RBP16.16■□□□□ 0.18
CLN3-230ENST00000568076 UBTD1Q9HAC8 227 aa16.16■□□□□ 0.18
CLN3-230ENST00000568076 A0A1W2PRE2 83 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 A6NNC1 897 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms