RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CORTO00230 105 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 DFFBO76075 338 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 CD74P04233 296 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 RNASE2P10153 161 aaKnown RBP11.8□□□□□ -0.52
CLN3-229ENST00000567963 PPP5CP53041 499 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 TRIM16LQ309B1 348 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 TMEM229BQ8NBD8 167 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 C15orf40Q8WUR7 153 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 FRAS1Q86XX4 4008 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 IGHV3-66A0A0C4DH42 116 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 A0A0G2JRQ6 117 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 DNASE2O00115 360 aaPredicted RBP11.79□□□□□ -0.52
CLN3-229ENST00000567963 UCP1P25874 307 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 TAS2R19P59542 299 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 CCDC71LQ8N9Z2 235 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 OR13C8Q8NGS7 320 aa11.79□□□□□ -0.52
CLN3-229ENST00000567963 PHLDA1Q8WV24 401 aaPredicted RBP11.79□□□□□ -0.52
CLN3-229ENST00000567963 RRNAD1Q96FB5 475 aaKnown RBP11.79□□□□□ -0.52
CLN3-229ENST00000567963 FNDC4Q9H6D8 234 aaPredicted RBP11.79□□□□□ -0.52
CLN3-229ENST00000567963 RSL24D1Q9UHA3 163 aaKnown RBP11.79□□□□□ -0.52
CLN3-229ENST00000567963 TRAV2A0A0B4J234 112 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 NOL3O60936 208 aaKnown RBP11.78□□□□□ -0.52
CLN3-229ENST00000567963 CLN5O75503 358 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 B3GALNT1O75752 331 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 RAB3DO95716 219 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 NPPCP23582 126 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 HOXA1P49639 335 aaPredicted RBP11.78□□□□□ -0.52
CLN3-229ENST00000567963 RPL11P62913 178 aaKnown RBP11.78□□□□□ -0.52
CLN3-229ENST00000567963 MLANAQ16655 118 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 SCGB2B2Q4G0G5 96 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 Q6ZRM9 215 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 OR11H2Q8NH07 326 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 MARCH1Q8TCQ1 289 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 ENY2Q9NPA8 101 aa11.78□□□□□ -0.52
CLN3-229ENST00000567963 MRPL36Q9P0J6 103 aaKnown RBP11.78□□□□□ -0.52
CLN3-229ENST00000567963 OPRK1P41145 380 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 DEFB131AP59861 70 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 BSXQ3C1V8 233 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 LEMD1Q68G75 181 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 STEAP1BQ6NZ63 245 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 FAM24BQ8N5W8 94 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 OR4X1Q8NH49 305 aa11.77□□□□□ -0.52
CLN3-229ENST00000567963 A0A1W2PS18 150 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 GABARAPH6UMI1 98 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 CDS2O95674 445 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 CA1P00915 261 aaPredicted RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 SPCS2Q15005 226 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 AARDQ4LEZ3 155 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 FAM219AQ8IW50 185 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 RNASE11Q8TAA1 199 aaKnown RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 TMEM222Q9H0R3 208 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 MIXL1Q9H2W2 232 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 C11orf68Q9H3H3 251 aaKnown RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 TMEM231Q9H6L2 316 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 OR5AC1P0C628 307 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 CRYBB3P26998 211 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 SPCS3P61009 180 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 SSBP1Q04837 148 aaKnown RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 OR52E5Q8NH55 327 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 C11orf45Q8TAV5 145 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 GLYATL2Q8WU03 294 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 METTL26Q96S19 204 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 RTBDNQ9BSG5 229 aaPredicted RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.76□□□□□ -0.53
CLN3-229ENST00000567963 RABAC1Q9UI14 185 aa11.76□□□□□ -0.53
CLN3-229ENST00000567963 CCDC160A6NGH7 325 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 RGS5O15539 181 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 NANOS2P60321 138 aaKnown RBP11.75□□□□□ -0.53
CLN3-229ENST00000567963 TMEM187Q14656 261 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 FAAP20Q6NZ36 180 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 STHQ8IWL8 128 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 LHFPL5Q8TAF8 219 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 DYNC2LI1Q8TCX1 351 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 TMEM230Q96A57 120 aa11.75□□□□□ -0.53
CLN3-229ENST00000567963 TRAV30A0A087WSZ9 112 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 TEX13DA0A0J9YY54 714 aaPredicted RBP11.74□□□□□ -0.53
CLN3-229ENST00000567963 CTDSP2O14595 271 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 SCGB2A1O75556 95 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 IGKV1-17P01599 117 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 HTR2BP41595 481 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 MRPS10P82664 201 aaKnown RBP11.74□□□□□ -0.53
CLN3-229ENST00000567963 MEF2DQ14814 521 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 LGALS9CQ6DKI2 356 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 RBPMSQ93062 196 aaKnown RBP11.74□□□□□ -0.53
CLN3-229ENST00000567963 MFFQ9GZY8 342 aa11.74□□□□□ -0.53
CLN3-229ENST00000567963 C14orf166Q9Y224 244 aaKnown RBP11.74□□□□□ -0.53
CLN3-229ENST00000567963 K7EQG2 157 aa11.73□□□□□ -0.53
CLN3-229ENST00000567963 P2RY1P47900 373 aa11.73□□□□□ -0.53
CLN3-229ENST00000567963 RBMS2Q15434 407 aaKnown RBP11.73□□□□□ -0.53
CLN3-229ENST00000567963 SURF2Q15527 256 aaPredicted RBP11.73□□□□□ -0.53
CLN3-229ENST00000567963 TIGITQ495A1 244 aa11.73□□□□□ -0.53
CLN3-229ENST00000567963 SELENOHQ8IZQ5 122 aaKnown RBP11.73□□□□□ -0.53
CLN3-229ENST00000567963 RPP25LQ8N5L8 163 aaKnown RBP11.73□□□□□ -0.53
CLN3-229ENST00000567963 STXBP6Q8NFX7 210 aa11.73□□□□□ -0.53
CLN3-229ENST00000567963 NAA60Q9H7X0 242 aa11.73□□□□□ -0.53
CLN3-229ENST00000567963 AGRNO00468 2067 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 RPS10-NUDT3A0A1W2PQS6 291 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 DISC1C4P0D8 188 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 DEFB4AO15263 64 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 IFNA4P05014 189 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms