RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GINS3Q9BRX5 216 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 IGKV3-7A0A075B6H7 116 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 OPRK1P41145 380 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 TFPI2P48307 235 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 PVRIGQ6DKI7 326 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 ZNF600Q6ZNG1 722 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 OR52E5Q8NH55 327 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 HEYLQ9NQ87 328 aaPredicted RBP15.42■□□□□ 0.06
CLN3-219ENST00000565778 CACNG5Q9UF02 275 aa15.42■□□□□ 0.06
CLN3-219ENST00000565778 CCDC160A6NGH7 325 aa15.41■□□□□ 0.06
CLN3-219ENST00000565778 ODF3L2Q3SX64 289 aa15.41■□□□□ 0.06
CLN3-219ENST00000565778 OVOL2Q9BRP0 275 aa15.41■□□□□ 0.06
CLN3-219ENST00000565778 PUS1Q9Y606 427 aaKnown RBP eCLIP15.41■□□□□ 0.06
CLN3-219ENST00000565778 CEBPZOSA8MTT3 80 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 AKR1C4P17516 323 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 BMI1P35226 326 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 HTR2BP41595 481 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 APOC4P55056 127 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 CMC4P56277 68 aaPredicted RBP15.4■□□□□ 0.06
CLN3-219ENST00000565778 GBGT1Q8N5D6 347 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 FNDC4Q9H6D8 234 aaPredicted RBP15.4■□□□□ 0.06
CLN3-219ENST00000565778 TMEM56-RWDD3S4R434 201 aa15.4■□□□□ 0.06
CLN3-219ENST00000565778 CLN5O75503 358 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 PAFAH1B2P68402 229 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 AARDQ4LEZ3 155 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 PYDC2Q56P42 97 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 TCF24Q7RTU0 167 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 OR4X1Q8NH49 305 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 TMEM230Q96A57 120 aa15.39■□□□□ 0.05
CLN3-219ENST00000565778 RYR3Q15413 4870 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 SCGB2A1O75556 95 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 APOHP02749 345 aaPredicted RBP15.38■□□□□ 0.05
CLN3-219ENST00000565778 CD5P06127 495 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 RPL35AP18077 110 aaKnown RBP15.38■□□□□ 0.05
CLN3-219ENST00000565778 NPPCP23582 126 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 TMEM187Q14656 261 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 BSXQ3C1V8 233 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 FAM90A2PQ658T7 463 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 WFDC3Q8IUB2 231 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 APRG1Q8IVJ8 170 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 STPG3Q8N7X2 389 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 IL22RA2Q969J5 263 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 GALNT14Q96FL9 552 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 PRR13Q9NZ81 148 aa15.38■□□□□ 0.05
CLN3-219ENST00000565778 MRPL36Q9P0J6 103 aaKnown RBP15.38■□□□□ 0.05
CLN3-219ENST00000565778 IGHV3-66A0A0C4DH42 116 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 A0A1B0GU03 582 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 RPS10-NUDT3A0A1W2PQS6 291 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 UBE2CO00762 179 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 NXPH3O95157 252 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 FAUP35544 74 aaKnown RBP15.37■□□□□ 0.05
CLN3-219ENST00000565778 RPL11P62913 178 aaKnown RBP15.37■□□□□ 0.05
CLN3-219ENST00000565778 Q6ZWC4 215 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 ST8SIA2Q92186 375 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 ZFAND3Q9H8U3 227 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 CACFD1Q9UGQ2 172 aa15.37■□□□□ 0.05
CLN3-219ENST00000565778 TRAV30A0A087WSZ9 112 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 DNASE2O00115 360 aaPredicted RBP15.36■□□□□ 0.05
CLN3-219ENST00000565778 SPRY2O43597 315 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 SULT1A3P0DMM9 295 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 SULT1A4P0DMN0 295 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 S100A5P33763 92 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 C2orf83Q53S99 150 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 LILRB2Q8N423 598 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 TOMM5Q8N4H5 51 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 VSIRQ9H7M9 311 aa15.36■□□□□ 0.05
CLN3-219ENST00000565778 KIR2DL5BA0A0G2JN68 375 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 KIR2DL5BA0A0G2JPC4 375 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 LCE6AA0A183 80 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 DFFBO76075 338 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 ANXA3P12429 323 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 AP3S2P59780 193 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 LYZL2Q7Z4W2 148 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 KIR2DL5AQ8N109 375 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 SLC24A4Q8NFF2 622 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 KIR2DL5BQ8NHK3 375 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 TMEM231Q9H6L2 316 aa15.35■□□□□ 0.05
CLN3-219ENST00000565778 TENM2Q9NT68 2774 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 A0A1W2PS18 150 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 ZNF124Q15973 351 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 DEFB135Q30KP9 77 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 TIGITQ495A1 244 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 NOXA1Q86UR1 476 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 LGI3Q8N145 548 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 RNASEH2CQ8TDP1 164 aaKnown RBP15.34■□□□□ 0.05
CLN3-219ENST00000565778 MAP6D1Q9H9H5 199 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 TP53TG1Q9Y2A0 90 aa15.34■□□□□ 0.05
CLN3-219ENST00000565778 A0A0B4J2A0 478 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 SLC25A4P12235 298 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 CCR6P51684 374 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 SUPT4H1P63272 117 aaKnown RBP15.33■□□□□ 0.04
CLN3-219ENST00000565778 KLF9Q13886 244 aaPredicted RBP15.33■□□□□ 0.04
CLN3-219ENST00000565778 NMSQ5H8A3 153 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 TMED4Q7Z7H5 227 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 NARS2Q96I59 477 aaKnown RBP15.33■□□□□ 0.04
CLN3-219ENST00000565778 METTL26Q96S19 204 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 MS4A6AQ9H2W1 248 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 SHPKQ9UHJ6 478 aa15.33■□□□□ 0.04
CLN3-219ENST00000565778 IFNA10P01566 189 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 IGKV1-17P01599 117 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms