RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 C2orf83Q53S99 150 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 ACSM6Q6P461 480 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 BSCL2Q96G97 398 aaPredicted RBP13.2□□□□□ -0.3
CLN3-217ENST00000565354 CIB3Q96Q77 187 aaPredicted RBP13.2□□□□□ -0.3
CLN3-217ENST00000565354 MAGT1Q9H0U3 335 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 GSKIPQ9P0R6 139 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 PEMTQ9UBM1 199 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 PAIP2BQ9ULR5 123 aaKnown RBP13.2□□□□□ -0.3
CLN3-217ENST00000565354 DNAH7Q8WXX0 4024 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 MPTX1A8MV57 137 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 SYNGR2O43760 224 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 IGHV3-48P01763 117 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 NHLRC4P0CG21 123 aaPredicted RBP13.19□□□□□ -0.3
CLN3-217ENST00000565354 RPP30P78346 268 aaKnown RBP13.19□□□□□ -0.3
CLN3-217ENST00000565354 FAM106AQ4KMX7 169 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 ZBTB8BQ8NAP8 495 aaPredicted RBP13.19□□□□□ -0.3
CLN3-217ENST00000565354 ATP6V0BQ99437 205 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 PALMDQ9NP74 551 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 U3KQK5 164 aa13.19□□□□□ -0.3
CLN3-217ENST00000565354 ZNF320A2RRD8 509 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 NUPL2O15504 423 aaKnown RBP13.18□□□□□ -0.3
CLN3-217ENST00000565354 GNG7O60262 68 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 SCGB2A1O75556 95 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 PTTG1O95997 202 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 IFNA4P05014 189 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 NPBWR1P48145 328 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 INSL3P51460 131 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 RAB11AP62491 216 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 BSXQ3C1V8 233 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 SPSB3Q6PJ21 355 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 GSG1LQ6UXU4 331 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 OR9G4Q8NGQ1 327 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 RNASEH2CQ8TDP1 164 aaKnown RBP13.18□□□□□ -0.3
CLN3-217ENST00000565354 OR10C1Q96KK4 312 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 TXN2Q99757 166 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 MARVELD1Q9BSK0 173 aa13.18□□□□□ -0.3
CLN3-217ENST00000565354 ZMAT5Q9UDW3 170 aaKnown RBP13.18□□□□□ -0.3
CLN3-217ENST00000565354 SNRPGP15A8MWD9 76 aa13.17□□□□□ -0.3
CLN3-217ENST00000565354 C3orf84H3BNL1 204 aa13.17□□□□□ -0.3
CLN3-217ENST00000565354 LY86O95711 162 aa13.17□□□□□ -0.3
CLN3-217ENST00000565354 ATP5IP56385 69 aaPredicted RBP13.17□□□□□ -0.3
CLN3-217ENST00000565354 ETFRF1Q6IPR1 90 aa13.17□□□□□ -0.3
CLN3-217ENST00000565354 OR4D5Q8NGN0 318 aa13.17□□□□□ -0.3
CLN3-217ENST00000565354 IGHV3-35A0A0C4DH35 117 aa13.16□□□□□ -0.3
CLN3-217ENST00000565354 SSSCA1O60232 199 aa13.16□□□□□ -0.3
CLN3-217ENST00000565354 SPNP16150 400 aa13.16□□□□□ -0.3
CLN3-217ENST00000565354 POLR2GP62487 172 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLN3-217ENST00000565354 RELQ04864 619 aaPredicted RBP13.16□□□□□ -0.3
CLN3-217ENST00000565354 PVRIGQ6DKI7 326 aa13.16□□□□□ -0.3
CLN3-217ENST00000565354 GPHB5Q86YW7 130 aa13.16□□□□□ -0.3
CLN3-217ENST00000565354 RYR2Q92736 4967 aa13.15□□□□□ -0.3
CLN3-217ENST00000565354 SSNA1O43805 119 aa13.15□□□□□ -0.3
CLN3-217ENST00000565354 SLC25A4P12235 298 aa13.15□□□□□ -0.3
CLN3-217ENST00000565354 ID3Q02535 119 aa13.15□□□□□ -0.3
CLN3-217ENST00000565354 SPANXN5Q5MJ07 72 aa13.15□□□□□ -0.3
CLN3-217ENST00000565354 FNDC4Q9H6D8 234 aaPredicted RBP13.15□□□□□ -0.3
CLN3-217ENST00000565354 LGALS9O00182 355 aa13.14□□□□□ -0.31
CLN3-217ENST00000565354 GOSR2O14653 212 aa13.14□□□□□ -0.31
CLN3-217ENST00000565354 FCGR2BP31994 310 aaPredicted RBP13.14□□□□□ -0.31
CLN3-217ENST00000565354 C2orf50Q96LR7 162 aa13.14□□□□□ -0.31
CLN3-217ENST00000565354 CHRDL1Q9BU40 450 aa13.14□□□□□ -0.31
CLN3-217ENST00000565354 PSENENQ9NZ42 101 aa13.14□□□□□ -0.31
CLN3-217ENST00000565354 STRAPQ9Y3F4 350 aaKnown RBP13.14□□□□□ -0.31
CLN3-217ENST00000565354 LSM5Q9Y4Y9 91 aaKnown RBP13.14□□□□□ -0.31
CLN3-217ENST00000565354 EPPK1P58107 5090 aaKnown RBP13.13□□□□□ -0.31
CLN3-217ENST00000565354 F8W735 103 aaPredicted RBP13.13□□□□□ -0.31
CLN3-217ENST00000565354 H3BP45 60 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 L7N2F9 121 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 YIF1AO95070 293 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 VAMP2P63027 116 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 MLANAQ16655 118 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 RGS21Q2M5E4 152 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 SLC16A13Q7RTY0 426 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 OR4X1Q8NH49 305 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 DYNLRB2Q8TF09 96 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 TMEM170AQ8WVE7 144 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 SLC35E1Q96K37 410 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 C20orf24Q9BUV8 137 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 UFC1Q9Y3C8 167 aa13.13□□□□□ -0.31
CLN3-217ENST00000565354 LYSTQ99698 3801 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 TRAV30A0A087WSZ9 112 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 C15orf62A8K5M9 175 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 NDUFA4O00483 81 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 CLN5O75503 358 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 CTSGP08311 255 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 RND2P52198 227 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 S100A10P60903 97 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 ACY3Q96HD9 319 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 RAB40CQ96S21 281 aa13.12□□□□□ -0.31
CLN3-217ENST00000565354 ZNF436Q9C0F3 470 aaPredicted RBP13.12□□□□□ -0.31
CLN3-217ENST00000565354 RCL1Q9Y2P8 373 aaKnown RBP13.12□□□□□ -0.31
CLN3-217ENST00000565354 BIRC6Q9NR09 4857 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 TMEM50AO95807 157 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 MBPP02686 304 aaPredicted RBP13.11□□□□□ -0.31
CLN3-217ENST00000565354 CSN3P07498 182 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 PVALBP20472 110 aaPredicted RBP13.11□□□□□ -0.31
CLN3-217ENST00000565354 ADMP35318 185 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 HAPLN4Q86UW8 402 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 TMEM190Q8WZ59 177 aa13.11□□□□□ -0.31
CLN3-217ENST00000565354 SMIM8Q96KF7 97 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms