RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ZNF343Q6P1L6 599 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 SLC16A13Q7RTY0 426 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 NDUFA11Q86Y39 141 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 ZNF502Q8TBZ5 544 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 C4orf3Q8WVX3 66 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 GAR1Q9NY12 217 aaKnown RBP15.99■□□□□ 0.15
CLN3-212ENST00000564574 FBN3Q75N90 2809 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 FXYD6-FXYD2A0A087WZ82 144 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 RPL12P30050 165 aaKnown RBP15.98■□□□□ 0.15
CLN3-212ENST00000564574 HBG1P69891 147 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 HBG2P69892 147 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 DLK1P80370 383 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 RUNX1Q01196 453 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 EWSR1Q01844 656 aaKnown RBP eCLIP15.98■□□□□ 0.15
CLN3-212ENST00000564574 C3orf56Q8N813 242 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 SLC35E1Q96K37 410 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 GGACTQ9BVM4 153 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 GNB4Q9HAV0 340 aa15.98■□□□□ 0.15
CLN3-212ENST00000564574 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.97■□□□□ 0.15
CLN3-212ENST00000564574 IGHV3-21A0A0B4J1V1 117 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 FNDC10F2Z333 226 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 SMLR1H3BR10 107 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 CST7O76096 145 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 IGHV3-11P01762 117 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 S100A11P31949 105 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 NPBWR1P48145 328 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 ACSM6Q6P461 480 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 ZNF546Q86UE3 836 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 OR4X1Q8NH49 305 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 AQP10Q96PS8 301 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 TNFSF18Q9UNG2 199 aa15.97■□□□□ 0.15
CLN3-212ENST00000564574 STAB1Q9NY15 2570 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 NUDT19A8MXV4 375 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 I3L521 148 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 SLC38A11Q08AI6 406 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 ATP6V1FQ16864 119 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 SHISA2Q6UWI4 295 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 HAPLN4Q86UW8 402 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 INO80EQ8NBZ0 244 aaPredicted RBP15.96■□□□□ 0.15
CLN3-212ENST00000564574 TMEM116Q8NCL8 245 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 KLHL30-AS1Q8NEE0 82 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 CCDC140Q96MF4 163 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 ZC4H2Q9NQZ6 224 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 HSPB11Q9Y547 144 aa15.96■□□□□ 0.15
CLN3-212ENST00000564574 HMSDA8MTL9 139 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 SCGB2A1O75556 95 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 C1QBP02746 253 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 NHLH2Q02577 135 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 ARL16Q0P5N6 197 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 MLANAQ16655 118 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 Q56UQ5 140 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 ACOT7LQ6ZUV0 252 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 LILRB2Q8N423 598 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 NEURL2Q9BR09 285 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 PEF1Q9UBV8 284 aaKnown RBP15.95■□□□□ 0.14
CLN3-212ENST00000564574 S4R3C0 116 aa15.95■□□□□ 0.14
CLN3-212ENST00000564574 TRAV30A0A087WSZ9 112 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 ADARB2-AS1A8MUL3 147 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 CLN5O75503 358 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 IGHV3-23P01764 117 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 GAMTQ14353 236 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 CLEC19AQ6UXS0 136 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 TMEM217Q8N7C4 229 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 OR1S2Q8NGQ3 325 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 BSCL2Q96G97 398 aaPredicted RBP15.94■□□□□ 0.14
CLN3-212ENST00000564574 OR5B12Q96R08 314 aa15.94■□□□□ 0.14
CLN3-212ENST00000564574 F8W735 103 aaPredicted RBP15.93■□□□□ 0.14
CLN3-212ENST00000564574 GNG7O60262 68 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 IGHV3-48P01763 117 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 HSPB1P04792 205 aaKnown RBP15.93■□□□□ 0.14
CLN3-212ENST00000564574 CLEC3BP05452 202 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 RND2P52198 227 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 SPSB3Q6PJ21 355 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 C18orf65Q6ZTR6 163 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 UBAC2Q8NBM4 344 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 OR5C1Q8NGR4 320 aa15.93■□□□□ 0.14
CLN3-212ENST00000564574 MRPL36Q9P0J6 103 aaKnown RBP15.93■□□□□ 0.14
CLN3-212ENST00000564574 A0A1W2PRX2 142 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 ANKRD34BA5PLL1 514 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 RNF222A6NCQ9 220 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 ARPC5O15511 151 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 GPR183P32249 361 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 ARL3P36405 182 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 VWC2Q2TAL6 325 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 NSUN5P1Q3KNT7 163 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 HIST2H2BDQ6DRA6 164 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 C8orf86Q6ZUL3 223 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 TMEM144Q7Z5S9 345 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 OR11H4Q8NGC9 324 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 NPIPB3Q92617 1050 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 ACY3Q96HD9 319 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 TMEM147Q9BVK8 224 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 NPVFQ9HCQ7 196 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 UQCC1Q9NVA1 299 aa15.92■□□□□ 0.14
CLN3-212ENST00000564574 SMCO3A2RU48 225 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 OR2T8A6NH00 312 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 TGOLN2O43493 480 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 PFDN1O60925 122 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 AKR1C1Q04828 323 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 THAP8Q8NA92 274 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms