RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SGK494Q96LW2 274 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 SLC25A33Q9BSK2 321 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 TUBG2Q9NRH3 451 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 DKK4Q9UBT3 224 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 PLXNB1O43157 2135 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 ABCA1O95477 2261 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 DMXL2Q8TDJ6 3036 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 LHBP01229 141 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 APCSP02743 223 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 REG1BP48304 166 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 PPOXP50336 477 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 TAS2R45P59539 299 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 LHFPL4Q7Z7J7 247 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 IGF2BP2-AS1Q96M15 143 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 GAL3ST2Q9H3Q3 398 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 TTC28Q96AY4 2481 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 E7EUB6 86 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 PLAUP00749 431 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 OR5G3P0C626 314 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 C8orf88P0DMB2 117 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 RPL19P84098 196 aaKnown RBP10.74□□□□□ -0.69
CLN3-210ENST00000563874 OR10J3Q5JRS4 329 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 NIT1Q86X76 327 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 ZNF439Q8NDP4 499 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 NUDT10Q8NFP7 164 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 TSKUQ8WUA8 353 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 SARAFQ96BY9 339 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 SERTM2A0A1B0GWG4 89 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 RNASE2P10153 161 aaKnown RBP10.74□□□□□ -0.69
CLN3-210ENST00000563874 CHRNB4P30926 498 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 CFHR2P36980 270 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 RPRMLQ8N4K4 120 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 TXN2Q99757 166 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 CLEC5AQ9NY25 188 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 CACNA1HO95180 2353 aa10.74□□□□□ -0.69
CLN3-210ENST00000563874 SMIM27A0A1W2PRY6 76 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 CTRLP40313 264 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 RTL8BQ17RB0 113 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 RNF151Q2KHN1 245 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 Q6ZN92 141 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.73□□□□□ -0.69
CLN3-210ENST00000563874 SSBP4Q9BWG4 385 aaPredicted RBP10.73□□□□□ -0.69
CLN3-210ENST00000563874 ZNF331Q9NQX6 463 aaPredicted RBP10.73□□□□□ -0.69
CLN3-210ENST00000563874 DSCAML1Q8TD84 2053 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 DPRXA6NFQ7 191 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 HLA-DQA1P01909 254 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 GPR6P46095 362 aaPredicted RBP10.73□□□□□ -0.69
CLN3-210ENST00000563874 MFAP2P55001 183 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 SEM1Q6ZVN7 128 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 SMIM15Q7Z3B0 74 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 ADTRPQ96IZ2 230 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 SLC35E1Q96K37 410 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 SLC25A2Q9BXI2 301 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 PKDREJQ9NTG1 2253 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 SP9P0CG40 484 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 CD69Q07108 199 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 C10orf55Q5SWW7 151 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 FAM167A-AS1Q96KT0 104 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 ZNF257Q9Y2Q1 563 aa10.73□□□□□ -0.69
CLN3-210ENST00000563874 GVINP1Q7Z2Y8 2422 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 A0A1W2PN81 502 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 A0A1W2PRE2 83 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 HYPMO75409 117 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 POU2AF1Q16633 256 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 C2orf83Q53S99 150 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 COL5A1-AS1Q5SY13 56 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 STPG4Q8N801 248 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 GAFA1Q96PS6 74 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 RNF7Q9UBF6 113 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 AMMECR1Q9Y4X0 333 aaPredicted RBP10.72□□□□□ -0.69
CLN3-210ENST00000563874 ARL2-SNX15V9GYD0 113 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 ADGRG4Q8IZF6 3080 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 FNDC10F2Z333 226 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 CAMPP49913 170 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 GNG5P63218 68 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 GDF5OSQ5U4N7 250 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 C11orf42Q8N5U0 333 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 C18orf32Q8TCD1 76 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 HARBI1Q96MB7 349 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 MRPL20Q9BYC9 149 aaKnown RBP10.72□□□□□ -0.69
CLN3-210ENST00000563874 COMMD5Q9GZQ3 224 aa10.72□□□□□ -0.69
CLN3-210ENST00000563874 IZUMO1RA6ND01 250 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 IGLC2P0DOY2 106 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 IGLC3P0DOY3 106 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 PRRX1P54821 245 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 TNFAIP6P98066 277 aaPredicted RBP10.71□□□□□ -0.69
CLN3-210ENST00000563874 STUMQ69YW2 141 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 ZNF474Q6S9Z5 364 aaPredicted RBP10.71□□□□□ -0.69
CLN3-210ENST00000563874 MRPL52Q86TS9 123 aaKnown RBP10.71□□□□□ -0.69
CLN3-210ENST00000563874 BORCS7Q96B45 105 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 DNAJC4Q9NNZ3 241 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 CORTO00230 105 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 RPL8P62917 257 aaKnown RBP10.71□□□□□ -0.69
CLN3-210ENST00000563874 TNXAQ16473 311 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 SLC25A48Q6ZT89 311 aaKnown RBP10.71□□□□□ -0.69
CLN3-210ENST00000563874 C22orf34Q6ZV56 151 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 Q6ZVH6 145 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 CLEC7AQ9BXN2 247 aa10.71□□□□□ -0.69
CLN3-210ENST00000563874 TCF21O43680 179 aa10.71□□□□□ -0.7
CLN3-210ENST00000563874 GLRXP35754 106 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms