RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 HNRNPCP07910 306 aaKnown RBP eCLIP7.43□□□□□ -1.22
SF3B3-204ENST00000563739 CTSGP08311 255 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 HERV-K104P61576 105 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 SSBP1Q04837 148 aaKnown RBP7.43□□□□□ -1.22
SF3B3-204ENST00000563739 TMEM187Q14656 261 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 LEMD1Q68G75 181 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 LAMTOR1Q6IAA8 161 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 Q6ZRM9 215 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 TRPT1Q86TN4 253 aaKnown RBP7.43□□□□□ -1.22
SF3B3-204ENST00000563739 VSTM2AQ8TAG5 236 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 SCARB1Q8WTV0 552 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 TCTEX1D2Q8WW35 142 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 GIMAP1Q8WWP7 306 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 FCAMRQ8WWV6 532 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 BSCL2Q96G97 398 aaPredicted RBP7.43□□□□□ -1.22
SF3B3-204ENST00000563739 OR10C1Q96KK4 312 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 C7orf50Q9BRJ6 194 aaKnown RBP7.43□□□□□ -1.22
SF3B3-204ENST00000563739 RHPN1-AS1Q9BWJ2 59 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 FXYD6Q9H0Q3 95 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 KLK11Q9UBX7 282 aa7.43□□□□□ -1.22
SF3B3-204ENST00000563739 HMCN2Q8NDA2 5059 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 IGKV3-7A0A075B6H7 116 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 IGLV2-18A0A075B6J9 118 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 IGHV3OR16-13A0A075B7E8 117 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 IGHV3-74A0A0B4J1X5 117 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 FAM240BA0A1B0GVZ2 78 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 C15orf62A8K5M9 175 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 UPK2O00526 184 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 TBPP20226 339 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 FXYD4P59646 89 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 TNP2Q05952 138 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 MSMO1Q15800 293 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 TMEM17Q86X19 198 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 Q8N1X5 172 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 TOMM5Q8N4H5 51 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 GBGT1Q8N5D6 347 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 SECTM1Q8WVN6 248 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 MOB3AQ96BX8 217 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 ZNF2Q9BSG1 426 aaPredicted RBP7.42□□□□□ -1.22
SF3B3-204ENST00000563739 C20orf24Q9BUV8 137 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 TAS2R8Q9NYW2 309 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 PRELID3BQ9Y3B1 194 aa7.42□□□□□ -1.22
SF3B3-204ENST00000563739 CENPXA8MT69 81 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 M0QYG6 137 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 DHFRP00374 187 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 CD3DP04234 171 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 SERPINE2P07093 398 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 DEFA4P12838 97 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 TAS2R19P59542 299 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 DEFB131AP59861 70 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 KLF9Q13886 244 aaPredicted RBP7.41□□□□□ -1.22
SF3B3-204ENST00000563739 RNASE10Q5GAN6 216 aaKnown RBP7.41□□□□□ -1.22
SF3B3-204ENST00000563739 SPSB3Q6PJ21 355 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 DHRS11Q6UWP2 260 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 LINC00528Q8N1L1 170 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 TMEM229BQ8NBD8 167 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 ATP6V0BQ99437 205 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 HSD17B10Q99714 261 aaKnown RBP7.41□□□□□ -1.22
SF3B3-204ENST00000563739 MARVELD1Q9BSK0 173 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 SLC5A7Q9GZV3 580 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 VSIRQ9H7M9 311 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 C21orf62Q9NYP8 219 aa7.41□□□□□ -1.22
SF3B3-204ENST00000563739 F11RQ9Y624 299 aaKnown RBP7.41□□□□□ -1.22
SF3B3-204ENST00000563739 DEFB131BA0A096LNP1 70 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 DBX1A6NMT0 343 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 BOLA2-SMG1P6H3BVE0 249 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 NUPL2O15504 423 aaKnown RBP7.4□□□□□ -1.22
SF3B3-204ENST00000563739 TNFSF12O43508 249 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 P0DMU3 169 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 FAM231AP0DMU4 169 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 FAM231CP0DMU5 169 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 MIFP14174 115 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 BTCP35070 178 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 AP3S2P59780 193 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 TSPAN5P62079 268 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 STEAP1BQ6NZ63 245 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 ZNF818PQ6ZRF7 136 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 ARRDC1Q8N5I2 433 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 TMEM116Q8NCL8 245 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 ZBTB34Q8NCN2 500 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 OR4D10Q8NGI6 311 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 OR6F1Q8NGZ6 308 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 ST8SIA2Q92186 375 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 SRSF8Q9BRL6 282 aaKnown RBP7.4□□□□□ -1.22
SF3B3-204ENST00000563739 QTRT1Q9BXR0 403 aaKnown RBP7.4□□□□□ -1.22
SF3B3-204ENST00000563739 CCL28Q9NRJ3 127 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 CLEC5AQ9NY25 188 aa7.4□□□□□ -1.22
SF3B3-204ENST00000563739 TEX50A0A1B0GTY4 177 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 ANKRD20A5PA0PJZ0 165 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 NAP1L6A6NFF2 107 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 I3L2K1 104 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 RBFOX2O43251 390 aaKnown RBP eCLIP7.39□□□□□ -1.23
SF3B3-204ENST00000563739 RAB3DO95716 219 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 FGF2P09038 288 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 TRAPPC2P0DI81 140 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 TRAPPC2BP0DI82 140 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 GNRHRP30968 328 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 CD300CQ08708 224 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 MEF2DQ14814 521 aa7.39□□□□□ -1.23
SF3B3-204ENST00000563739 AADACL3Q5VUY0 350 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms