RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TRAV30A0A087WSZ9 112 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 IGSF23A1L1A6 192 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 C11orf94C9JXX5 98 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 SAP30O75446 220 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 HIST1H1BP16401 226 aaKnown RBP7.49□□□□□ -1.21
VPS39-205ENST00000562258 MST1LQ2TV78 715 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 ZNF585BQ52M93 769 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 BEND2Q8NDZ0 799 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 KAAG1Q9UBP8 84 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 IGSF10Q6WRI0 2623 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 DNAH14Q0VDD8 3507 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 OOSP1A8MZH6 123 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 TCF21O43680 179 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 SNAPINO95295 136 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 SRSF2Q01130 221 aaKnown RBP7.48□□□□□ -1.21
VPS39-205ENST00000562258 ZFP82Q8N141 532 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 SVBPQ8N300 66 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 RAB24Q969Q5 203 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 SH3BGRL3Q9H299 93 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 TMEM167BQ9NRX6 74 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 GAB2Q9UQC2 676 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 A0A1W2PPQ1 181 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 KRBOX1C9JBD0 128 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 RBFOX2O43251 390 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS39-205ENST00000562258 CXCL2P19875 107 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 CD33P20138 364 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 TCL1AP56279 114 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 TEX38Q6PEX7 206 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 STPG3Q8N7X2 389 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 OR11H4Q8NGC9 324 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 SMIM8Q96KF7 97 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 BOD1L1Q8NFC6 3051 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 ATP6V0E1O15342 81 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 IGKV1-5P01602 117 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 EMP1P54849 157 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 HIST1H1AQ02539 215 aaPredicted RBP7.48□□□□□ -1.21
VPS39-205ENST00000562258 SRSF4Q08170 494 aaKnown RBP7.48□□□□□ -1.21
VPS39-205ENST00000562258 KCNIP4Q6PIL6 250 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 C19orf35Q6ZS72 473 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 LINC00305Q7Z4B0 112 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 PRNTQ86SH4 94 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 GLMPQ8WWB7 406 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 DUX3Q96PT4 197 aa7.48□□□□□ -1.21
VPS39-205ENST00000562258 ZNF331Q9NQX6 463 aaPredicted RBP7.48□□□□□ -1.21
VPS39-205ENST00000562258 RNASEK-C17orf49H0YIS7 233 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 SMIM17P0DL12 118 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 NAT1P18440 290 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 BTCP35070 178 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 GNG4P50150 75 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 BLCAPP62952 87 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 TFF3Q07654 80 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 LHFPL1Q86WI0 220 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 RNF166Q96A37 237 aaPredicted RBP7.47□□□□□ -1.21
VPS39-205ENST00000562258 RNF224P0DH78 156 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 RPL7P18124 248 aaKnown RBP7.47□□□□□ -1.21
VPS39-205ENST00000562258 SUPT4H1P63272 117 aaKnown RBP7.47□□□□□ -1.21
VPS39-205ENST00000562258 TPSG1Q9NRR2 321 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 BAHCC1Q9P281 2608 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 ZNF705GA8MUZ8 300 aaPredicted RBP7.47□□□□□ -1.21
VPS39-205ENST00000562258 CHEK1O14757 476 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 NDPQ00604 133 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 TMEM78Q5T7P6 136 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 BCL6BQ8N143 479 aaPredicted RBP7.47□□□□□ -1.21
VPS39-205ENST00000562258 RNF2Q99496 336 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 CTDSP1Q9GZU7 261 aa7.47□□□□□ -1.21
VPS39-205ENST00000562258 CENPVL3A0A0U1RRI6 287 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 CTXND1A0A1B0GTU2 59 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 INAFM1C9JVW0 142 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 LHBP01229 141 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 CAMPP49913 170 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 SRSF7Q16629 238 aaKnown RBP eCLIP7.46□□□□□ -1.21
VPS39-205ENST00000562258 Q6ZRM9 215 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 DDB2Q92466 427 aa7.46□□□□□ -1.21
VPS39-205ENST00000562258 COL5A1P20908 1838 aaPredicted RBP7.46□□□□□ -1.21
VPS39-205ENST00000562258 A0A0G2JRQ6 117 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 XKRY2A2RUG3 117 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 UFC1Q9Y3C8 167 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 A0A1W2PPR1 153 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 E9PQ18 207 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 H0Y8G0 127 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 PITX3O75364 302 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 SYNJ2BPP57105 145 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 PRCDQ00LT1 54 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 TMEM88Q6PEY1 159 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 BAGE2Q86Y30 109 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 OR10J6PQ8NGY7 276 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 BET1LQ9NYM9 111 aa7.46□□□□□ -1.22
VPS39-205ENST00000562258 A0A0B4J293 547 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 J3QLI3 93 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 MPDU1O75352 247 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 ICAM4Q14773 271 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 CYP2G1PQ6ZSU1 146 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 RPRMQ9NS64 109 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 C15orf65H3BRN8 121 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 C8orf88P0DMB2 117 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 HIST1H1EP10412 219 aaKnown RBP7.45□□□□□ -1.22
VPS39-205ENST00000562258 SNRPD3P62318 126 aaKnown RBP7.45□□□□□ -1.22
VPS39-205ENST00000562258 PAX8Q06710 450 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TMEM41BQ5BJD5 291 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 NHLRC2Q8NBF2 726 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms