RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SARAFQ96BY9 339 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 SNRNP40Q96DI7 357 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 CCL13Q99616 98 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 PAXXQ9BUH6 204 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 SSBP4Q9BWG4 385 aaPredicted RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 INTS1Q8N201 2190 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 ICE1Q9Y2F5 2266 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 TSPOP30536 169 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 ATP5IP56385 69 aaPredicted RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 RPL8P62917 257 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 ERHP84090 104 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 NUDT10Q8NFP7 164 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 NUDT11Q96G61 164 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 GRAMD2BQ96HH9 432 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 SLC25A15Q9Y619 301 aa11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 YLPM1P49750 1951 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-202ENST00000561976 IGHV3-48P01763 117 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 PTTG1IPP53801 180 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 RASL11AQ6T310 242 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 SAP30LQ9HAJ7 183 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 DSCAMO60469 2012 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 FAM181BA6NEQ2 426 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 DLL1O00548 723 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 PEX7O00628 323 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 GDF5OSQ5U4N7 250 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 C10orf113Q5VZT2 155 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 WIPF2Q8TF74 440 aaPredicted RBP11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 HARBI1Q96MB7 349 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 NCOR1P1Q9H4R4 102 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 BET1LQ9NYM9 111 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 RNF7Q9UBF6 113 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 PCNX2A6NKB5 2137 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 SVILO95425 2214 aa11.35□□□□□ -0.59
VPS9D1-202ENST00000561976 SSBP2P81877 361 aaPredicted RBP11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 PRR31Q5SQ13 230 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 FAM216BQ8N7L0 139 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 FDCSPQ8NFU4 85 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 HIGD1CA8MV81 97 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 EBLN2Q6P2I7 272 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 SLC25A48Q6ZT89 311 aaKnown RBP11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 Q6ZVH6 145 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 ZNF329Q86UD4 541 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 CACNG8Q8WXS5 425 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 SGK494Q96LW2 274 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 TECTAO75443 2155 aa11.34□□□□□ -0.59
VPS9D1-202ENST00000561976 TRAV9-2A0A087WT02 112 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 C19orf67A6NJJ6 358 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 NKX2-8O15522 239 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 PLAUP00749 431 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 UBE2G1P62253 170 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 SAPCD1Q5SSQ6 148 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 UNQ5815/PRO19632Q6UWF5 114 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 FAM231DQ6ZW35 169 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 MBD6Q96DN6 1003 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 ZNF714Q96N38 554 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 TNFRSF19Q9NS68 423 aa11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 RPUSD1Q9UJJ7 312 aaKnown RBP11.33□□□□□ -0.59
VPS9D1-202ENST00000561976 PSMB11A5LHX3 300 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 APOA2P02652 100 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 HIST1H1EP10412 219 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 GNG5P63218 68 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 TNFAIP6P98066 277 aaPredicted RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 OR1L4Q8NGR5 311 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 ORAOV1Q8WV07 137 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 NPIPB3Q92617 1050 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 GAFA1Q96PS6 74 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 ALKBH7Q9BT30 221 aaPredicted RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 CHRDL1Q9BU40 450 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 RPH3ALQ9UNE2 315 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 MRPS16Q9Y3D3 137 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 CORTO00230 105 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 GLRXP35754 106 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 RBMXL3Q8N7X1 1067 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 OR2D3Q8NGH3 330 aa11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 MRPL20Q9BYC9 149 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-202ENST00000561976 TMEM11P17152 192 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 REG1BP48304 166 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF430Q9H8G1 570 aaPredicted RBP11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 NDUFA4L2Q9NRX3 87 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 A0A1W2PN81 502 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 CCL25O15444 150 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 IGLL1P15814 213 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 KLF5Q13887 457 aaPredicted RBP11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 OR8B3Q8NGG8 313 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 FAM222BQ8WU58 562 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 BLNKQ8WV28 456 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 OR8B2Q96RD0 313 aa11.32□□□□□ -0.6
VPS9D1-202ENST00000561976 DSCAML1Q8TD84 2053 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 IGHV2-26A0A0B4J1V2 119 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 PRSS47A8MTI9 375 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 E7EUB6 86 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 SLC25A5P05141 298 aaKnown RBP11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 SRSF6Q13247 344 aaKnown RBP11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 PATE2Q6UY27 113 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 OSR1Q8TAX0 266 aaPredicted RBP11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 CLEC5AQ9NY25 188 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 CACNA1GO43497 2377 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 CDX4O14627 284 aaPredicted RBP11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 FAM169BQ8N8A8 192 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF738Q8NE65 137 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms