RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 GAGE1Q13065 139 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 EFNB3Q15768 340 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 RTL8BQ17RB0 113 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM183BQ1AE95 376 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 C17orf58Q2M2W7 97 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 RPEL1Q2QD12 228 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 MORN2Q502X0 79 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 GCSAMLQ5JQS6 135 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 OR10J3Q5JRS4 329 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PRAMEF5Q5TYX0 476 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PRAMEF6Q5VXH4 476 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 CST9LP1Q5W188 147 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 MIC13Q5XKP0 118 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 FAM53AQ6NSI3 398 aaPredicted RBP1.98□□□□□ -2.09
SPG11-223ENST00000560858 RASL11AQ6T310 242 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TOMM20LQ6UXN7 152 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PQLC2Q6ZP29 291 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM136Q6ZRR5 245 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 ZNF826PQ6ZT77 177 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TCF23Q7RTU1 214 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TGIF2LXQ8IUE1 241 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM256Q8N2U0 113 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PNKDQ8N490 385 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 CD177Q8N6Q3 437 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 Q8N976 141 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM178AQ8NBL3 297 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 ZNF439Q8NDP4 499 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 SLC24A4Q8NFF2 622 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 SGMS2Q8NHU3 365 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 CMTM2Q8TAZ6 248 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 FAM222BQ8WU58 562 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 LRRC29Q8WV35 223 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM37Q8WXS4 190 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 SDSLQ96GA7 329 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 ADTRPQ96IZ2 230 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 SLC35E1Q96K37 410 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 KCNS1Q96KK3 526 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 IGF2BP2-AS1Q96M15 143 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 FER1L6-AS2Q96M78 137 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM68Q96MH6 324 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 ZNF714Q96N38 554 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 MS4A10Q96PG2 267 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 CDX2Q99626 313 aaPredicted RBP1.98□□□□□ -2.09
SPG11-223ENST00000560858 SLC25A33Q9BSK2 321 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 GNB1LQ9BYB4 327 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 MRPL32Q9BYC8 188 aaKnown RBP1.98□□□□□ -2.09
SPG11-223ENST00000560858 OPN3Q9H1Y3 402 aaPredicted RBP1.98□□□□□ -2.09
SPG11-223ENST00000560858 LINC00574Q9H8X3 128 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PATZ1Q9HBE1 687 aaKnown RBP1.98□□□□□ -2.09
SPG11-223ENST00000560858 RAB9BQ9NP90 201 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 OSTCQ9NRP0 149 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TMEM167BQ9NRX6 74 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 FKBP11Q9NYL4 201 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 CALYQ9NYX4 217 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 IDI2-AS1Q9NZ38 188 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 PSG11Q9UQ72 335 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 ZNF257Q9Y2Q1 563 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 TRAPPC1Q9Y5R8 145 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 R4GN57 208 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 NAV3Q8IVL0 2385 aa1.98□□□□□ -2.09
SPG11-223ENST00000560858 IGLV3-9A0A075B6K5 115 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 TRAV3A0A0B4J244 114 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 IGHV1-18A0A0C4DH31 117 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 A0A1W2PPV4 95 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 A0A1W2PRE2 83 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 SMIM27A0A1W2PRY6 76 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 LNP1A1A4G5 178 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 GRIFINA4D1Z8 144 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 A8MXE2 369 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 SNURFLB1AK76 121 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 GGTLC3B5MD39 225 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 F2Z2F3 143 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 M0R1X1 148 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 ISLRO14498 428 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 DLEU1O43261 78 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 TIMM8AO60220 97 aaPredicted RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 FCGR3BO75015 233 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 ZNF324O75467 553 aaPredicted RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 LYZL6O75951 148 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 OR2J3O76001 311 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 LHBP01229 141 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 IGHV3-13P01766 116 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 HLA-DQA1P01909 254 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 TFF1P04155 84 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 LINC00869P0C866 280 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 SAA2P0DJI9 122 aaPredicted RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 RNASE2P10153 161 aaKnown RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 CD59P13987 128 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 IGFBP2P18065 325 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 CBLN1P23435 193 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 PRDX2P32119 198 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 BRS3P32247 399 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 CDKN1AP38936 164 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 ATP5IP56385 69 aaPredicted RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 SELENOVP59797 346 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 HSPE1P61604 102 aaKnown RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 RPS16P62249 146 aaKnown RBP1.97□□□□□ -2.09
SPG11-223ENST00000560858 CX3CL1P78423 397 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 PRCDQ00LT1 54 aa1.97□□□□□ -2.09
SPG11-223ENST00000560858 PAX2Q02962 417 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms