RNA–Protein interactions for RNA: ENST00000560842.1

PSMA4-221, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-221ENST00000560842 GINS4Q9BRT9 223 aa0.34□□□□□ -2.36
PSMA4-221ENST00000560842 NKIRAS1Q9NYS0 192 aa0.34□□□□□ -2.36
PSMA4-221ENST00000560842 HS3ST2Q9Y278 367 aa0.34□□□□□ -2.36
PSMA4-221ENST00000560842 KMT2DO14686 5537 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 MTUS2Q5JR59 1369 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 TGOLN2O43493 480 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 CDC42P60953 191 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 LPCAT3Q6P1A2 487 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 TSPAN32Q96QS1 320 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 TMEM70Q9BUB7 260 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 TMEM147Q9BVK8 224 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 C20orf27Q9GZN8 174 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 C11orf68Q9H3H3 251 aaKnown RBP0.33□□□□□ -2.36
PSMA4-221ENST00000560842 ERGIC3Q9Y282 383 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 TMEM56-RWDD3S4R434 201 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 EML5Q05BV3 1969 aa0.33□□□□□ -2.36
PSMA4-221ENST00000560842 WRNQ14191 1432 aaPredicted RBP eCLIP0.32□□□□□ -2.36
PSMA4-221ENST00000560842 HECW1Q76N89 1606 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 EXOC1LA0A1B0GW35 172 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 FAAHO00519 579 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 HIST1H1EP10412 219 aaKnown RBP0.32□□□□□ -2.36
PSMA4-221ENST00000560842 MAGOHP61326 146 aaKnown RBP0.32□□□□□ -2.36
PSMA4-221ENST00000560842 SOSTDC1Q6X4U4 206 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 HIST3H2BBQ8N257 126 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 COMMD5Q9GZQ3 224 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 DENND4CQ5VZ89 1909 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 HECW2Q9P2P5 1572 aa0.32□□□□□ -2.36
PSMA4-221ENST00000560842 DOCK5Q9H7D0 1870 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 CNTRLQ7Z7A1 2325 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 PSMD12O00232 456 aaPredicted RBP0.31□□□□□ -2.36
PSMA4-221ENST00000560842 OR2J2O76002 312 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 PSME3P61289 254 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 RNASE10Q5GAN6 216 aaKnown RBP0.31□□□□□ -2.36
PSMA4-221ENST00000560842 C10orf95Q9H7T3 257 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 SLC39A9Q9NUM3 307 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 ACER3Q9NUN7 267 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 RASL12Q9NYN1 266 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 ECM29Q5VYK3 1845 aa0.31□□□□□ -2.36
PSMA4-221ENST00000560842 ZFC3H1O60293 1989 aaKnown RBP0.3□□□□□ -2.36
PSMA4-221ENST00000560842 TRAV9-1A0A075B6T8 112 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 CLDN25C9JDP6 229 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 CETN3O15182 167 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 CALB1P05937 261 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 TPM3P06753 285 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 RPL5P46777 297 aaKnown RBP0.3□□□□□ -2.36
PSMA4-221ENST00000560842 SRSF6Q13247 344 aaKnown RBP0.3□□□□□ -2.36
PSMA4-221ENST00000560842 MPV17LQ2QL34 196 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 HIST2H3PS2Q5TEC6 136 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 SPATA8Q6RVD6 105 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 C3orf56Q8N813 242 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 DNAJC9Q8WXX5 260 aa0.3□□□□□ -2.36
PSMA4-221ENST00000560842 MRPL27Q9P0M9 148 aaKnown RBP0.3□□□□□ -2.36
PSMA4-221ENST00000560842 A0A1W2PPM0 123 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 ZNF736B4DX44 427 aaPredicted RBP0.29□□□□□ -2.36
PSMA4-221ENST00000560842 CD79AP11912 226 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 RPS20P60866 119 aaKnown RBP0.29□□□□□ -2.36
PSMA4-221ENST00000560842 SPCS3P61009 180 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 ACOT6Q3I5F7 207 aaPredicted RBP0.29□□□□□ -2.36
PSMA4-221ENST00000560842 CDKL4Q5MAI5 379 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 OR13D1Q8NGV5 346 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 PPP1R2P1Q96PQ5 205 aa0.29□□□□□ -2.36
PSMA4-221ENST00000560842 NHP2Q9NX24 153 aaKnown RBP0.29□□□□□ -2.36
PSMA4-221ENST00000560842 USP24Q9UPU5 2620 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.28□□□□□ -2.36
PSMA4-221ENST00000560842 SULT1B1O43704 296 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 PROSCO94903 275 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 SMIM10L2AP0DMW4 78 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 SMIM10L2BP0DMW5 78 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 MGST1P10620 155 aaKnown RBP0.28□□□□□ -2.36
PSMA4-221ENST00000560842 ZNF25P17030 456 aaPredicted RBP0.28□□□□□ -2.36
PSMA4-221ENST00000560842 CASQ1P31415 396 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 DEFB113Q30KQ7 82 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 OR52R1Q8NGF1 315 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 C4orf3Q8WVX3 66 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 MRPS26Q9BYN8 205 aaKnown RBP0.28□□□□□ -2.36
PSMA4-221ENST00000560842 DCSTAMPQ9H295 470 aa0.28□□□□□ -2.36
PSMA4-221ENST00000560842 ZNF106Q9H2Y7 1883 aaKnown RBP0.27□□□□□ -2.37
PSMA4-221ENST00000560842 TGIF2-C20orf24A0A0A6YYL0 155 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 PQLC2LA1A4F0 135 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 PRH1P02810 166 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 NKX2-5P52952 324 aaPredicted RBP0.27□□□□□ -2.37
PSMA4-221ENST00000560842 TPM4P67936 248 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 LINC01554Q52M75 96 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 ANKRD29Q8N6D5 301 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 ITFG2Q969R8 447 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 GPR146Q96CH1 333 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 CDC42SE1Q9NRR8 79 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 GUCA1BQ9UMX6 200 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 PKIGQ9Y2B9 76 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 ROBO3Q96MS0 1386 aa0.27□□□□□ -2.37
PSMA4-221ENST00000560842 MED1Q15648 1581 aaPredicted RBP0.27□□□□□ -2.37
PSMA4-221ENST00000560842 CHP2O43745 196 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 IFNA5P01569 189 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 SULT1A1P50225 295 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 BORCS5Q969J3 196 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 OSTCQ9NRP0 149 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 EPDR1Q9UM22 224 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 SLC35A3Q9Y2D2 325 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 TAF1LQ8IZX4 1826 aa0.26□□□□□ -2.37
PSMA4-221ENST00000560842 TRAV26-2A0A0B4J265 109 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms