RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 POPDC3Q9HBV1 291 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 FAM60AQ9NP50 221 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 DNAJC12Q9UKB3 198 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 LAMTOR2Q9Y2Q5 125 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 PIK3C2AO00443 1686 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 USP54Q70EL1 1684 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 COL14A1Q05707 1796 aaKnown RBP1.92□□□□□ -2.1
TRAV28-201ENST00000557548 UBR3Q6ZT12 1888 aa1.92□□□□□ -2.1
TRAV28-201ENST00000557548 ATRNO75882 1429 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 PAPPAQ13219 1627 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 DOT1LQ8TEK3 1739 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MAP2P11137 1827 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 N4BP2Q86UW6 1770 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ADGRB2O60241 1585 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MYOM2P54296 1465 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 RPRD2Q5VT52 1461 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 CDK12Q9NYV4 1490 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MEIKINA0A087WXM9 373 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TRAV4A0A0B4J268 109 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 A0A1B0GVY2 172 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TMEM269A0A1B0GVZ9 245 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 DUXBA0A1W2PPF3 345 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 M0R2Z0 102 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 M0R381 172 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TP53I11O14683 189 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 GGCTO75223 188 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 DEDDO75618 318 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 POP7O75817 140 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 OR2H2O95918 312 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 HLA-DQB2P05538 268 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 SCTP09683 121 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 RPS3P23396 243 aaKnown RBP eCLIP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ATP5G3P48201 142 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TAS2R30P59541 319 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 SELENOWP63302 87 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 DHRS2Q13268 280 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 BIKQ13323 160 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TMEM69Q5SWH9 247 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 DNLZQ5SXM8 178 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MRPL2Q5T653 305 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 GLT8D1Q68CQ7 371 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 HAGHLQ6PII5 290 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 Q6ZS49 121 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 BAP18Q8IXM2 172 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TCTE3Q8IZS6 198 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 KRTCAP2Q8N6L1 136 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ZFP62Q8NB50 900 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TMEM229BQ8NBD8 167 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 OR8A1Q8NGG7 326 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MRPL30Q8TCC3 161 aaKnown RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 RTN4IP1Q8WWV3 396 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ISOC1Q96CN7 298 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 GNPNAT1Q96EK6 184 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ADAT3Q96EY9 351 aaPredicted RBP1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ABHD14BQ96IU4 210 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 PPP3R2Q96LZ3 170 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 LXNQ9BS40 222 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TSSK6Q9BXA6 273 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 SMIM3Q9BZL3 60 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 PLA2G12AQ9BZM1 189 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 CXorf21Q9HAI6 301 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TVP23BQ9NYZ1 205 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 AK3Q9UIJ7 227 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ERG28Q9UKR5 140 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TRAPPC2LQ9UL33 140 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 MED31Q9Y3C7 131 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 LOXHD1Q8IVV2 1947 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 KIF13BQ9NQT8 1826 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 OVOS2A0A0G2JMS6 1433 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 TECPR2O15040 1411 aa1.91□□□□□ -2.1
TRAV28-201ENST00000557548 ZNF106Q9H2Y7 1883 aaKnown RBP1.9□□□□□ -2.1
TRAV28-201ENST00000557548 ADAMTSL1Q8N6G6 1762 aa1.9□□□□□ -2.1
TRAV28-201ENST00000557548 ADGRB1O14514 1584 aa1.9□□□□□ -2.1
TRAV28-201ENST00000557548 PCM1Q15154 2024 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 DICER1Q9UPY3 1922 aaKnown RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 AFDNP55196 1824 aaKnown RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 IGKV2D-24A0A075B6R9 120 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 A0A087WUU8 490 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 IGHV3-43A0A0B4J1X8 118 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 TRAV5A0A0B4J249 113 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C20orf202A1L168 122 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C4orf51C9J302 202 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C9JAW5 83 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 CLDN25C9JDP6 229 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 F6UZH7 168 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 ZNF324O75467 553 aaPredicted RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 OPN1SWP03999 348 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 SMIM17P0DL12 118 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 BCL2P10415 239 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 CA7P43166 264 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 LPAR6P43657 344 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 GABRA2P47869 451 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 AKR1D1P51857 326 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 DEFA3P59666 94 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 HIST1H1AQ02539 215 aaPredicted RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 PLCXD2Q0VAA5 305 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 FUT5Q11128 374 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 EBI3Q14213 229 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 HES3Q5TGS1 186 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 LYRM7Q5U5X0 104 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms