RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 RFNGQ9Y644 331 aa8.92□□□□□ -0.98
ACTN1-216ENST00000556083 CTSBP07858 339 aa8.92□□□□□ -0.98
ACTN1-216ENST00000556083 TDGF1P13385 188 aa8.92□□□□□ -0.98
ACTN1-216ENST00000556083 TMEM160Q9NX00 188 aa8.92□□□□□ -0.98
ACTN1-216ENST00000556083 A0A1B0GWJ7 208 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 CRPP02741 224 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 OR5AN1Q8NGI8 311 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 BEND2Q8NDZ0 799 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 WNK3Q9BYP7 1800 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 IGKV1D-43A0A0B4J1Z2 117 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 RNF222A6NCQ9 220 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 TCF21O43680 179 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 DPM2O94777 84 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 MALP21145 153 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 Q6ZS92 163 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 SVILO95425 2214 aa8.91□□□□□ -0.98
ACTN1-216ENST00000556083 TRBV7-9A0A0J9YWB2 115 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 FGF16O43320 207 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 ZNF672Q499Z4 452 aaPredicted RBP8.9□□□□□ -0.98
ACTN1-216ENST00000556083 FOXL2NBQ6ZUU3 175 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.9□□□□□ -0.98
ACTN1-216ENST00000556083 C1QCP02747 245 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 CBLN1P23435 193 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 LHFPL1Q86WI0 220 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 ANKRD36A6QL64 1941 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 HIGD1CA8MV81 97 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 PRR32B1ATL7 298 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 PDE6HQ13956 83 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 PLEKHB2Q96CS7 222 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 SLC25A15Q9Y619 301 aa8.9□□□□□ -0.98
ACTN1-216ENST00000556083 ZNF646O15015 1829 aaPredicted RBP8.9□□□□□ -0.99
ACTN1-216ENST00000556083 COL11A1P12107 1806 aaPredicted RBP8.9□□□□□ -0.99
ACTN1-216ENST00000556083 RPL23P62829 140 aaKnown RBP8.9□□□□□ -0.99
ACTN1-216ENST00000556083 TPTE2P1Q5T6R2 138 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 MIR17HGQ75NE6 70 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 C10orf126Q8N4M7 172 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 OR5A1Q8NGJ0 315 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 OR9G4Q8NGQ1 327 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 SSC4DQ8WTU2 575 aa8.9□□□□□ -0.99
ACTN1-216ENST00000556083 TRBV24-1A0A075B6N3 115 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 SCO2A0A1W2PP80 73 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 TMEM178BH3BS89 294 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 H7C2G1 150 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 CD7P09564 240 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 TFF3Q07654 80 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 SIGLEC15Q6ZMC9 328 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 FOXC2Q99958 501 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 MBNL3Q9NUK0 354 aaKnown RBP8.89□□□□□ -0.99
ACTN1-216ENST00000556083 ATG2BQ96BY7 2078 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 IFITM2Q01629 132 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 ZNF415Q09FC8 603 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 FOXL1Q12952 345 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 LINC00518Q8N0U6 118 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 BMPERQ8N8U9 685 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 MDS2Q8NDY4 140 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 VGLL1Q99990 258 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 NRN1Q9NPD7 142 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 TRGV4A0A0C4DH28 118 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 PSMB11A5LHX3 300 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 ERVH48-1M5A8F1 160 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 IGHV1-8P0DP01 117 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 HAPLN4Q86UW8 402 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 IGHV2-26A0A0B4J1V2 119 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 TRAV8-6A0A0B4J262 113 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 NAPSAO96009 420 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 RNASE4P34096 147 aaKnown RBP8.89□□□□□ -0.99
ACTN1-216ENST00000556083 RPL36AP83881 106 aaKnown RBP8.89□□□□□ -0.99
ACTN1-216ENST00000556083 S100A7L2Q5SY68 101 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 RPL36ALQ969Q0 106 aaKnown RBP8.89□□□□□ -0.99
ACTN1-216ENST00000556083 KLK15Q9H2R5 256 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 SPANXA1Q9NS26 97 aa8.89□□□□□ -0.99
ACTN1-216ENST00000556083 IGKV1-9A0A0C4DH69 117 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 TIMM23O14925 209 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 GCSAMLQ5JQS6 135 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 TEX38Q6PEX7 206 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 GGNQ86UU5 652 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 SLC25A39Q9BZJ4 359 aaPredicted RBP8.88□□□□□ -0.99
ACTN1-216ENST00000556083 MSRB2Q9Y3D2 182 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 TMEM238C9JI98 176 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 SMAD7O15105 426 aaKnown RBP8.88□□□□□ -0.99
ACTN1-216ENST00000556083 TBX6O95947 436 aaPredicted RBP8.88□□□□□ -0.99
ACTN1-216ENST00000556083 SPANXDQ9BXN6 97 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 A0A1B0GV72 72 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 CCL3L1P16619 93 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 EFNB3Q15768 340 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 MRPL52Q86TS9 123 aaKnown RBP8.88□□□□□ -0.99
ACTN1-216ENST00000556083 OR2K2Q8NGT1 345 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 SPRR3Q9UBC9 169 aa8.88□□□□□ -0.99
ACTN1-216ENST00000556083 A0A0G2JMM0 328 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 A0A1W2PPB8 328 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 A0A1W2PRS3 328 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 KIR3DP1A8MWS1 328 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 NDUFB8O95169 186 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 KIAA1644Q3SXP7 199 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 OR10W1Q8NGF6 305 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 DEPPQ9NTK1 212 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 PLXNA1Q9UIW2 1896 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 PATJQ8NI35 1801 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 DOCK5Q9H7D0 1870 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 CASP8AP2Q9UKL3 1982 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms