RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 MED9Q9NWA0 146 aa0.93□□□□□ -2.26
SCFD1-217ENST00000555953 GLTPQ9NZD2 209 aa0.93□□□□□ -2.26
SCFD1-217ENST00000555953 CYSLTR1Q9Y271 337 aa0.93□□□□□ -2.26
SCFD1-217ENST00000555953 RTL1A6NKG5 1358 aa0.93□□□□□ -2.26
SCFD1-217ENST00000555953 ANAPC1Q9H1A4 1944 aa0.93□□□□□ -2.26
SCFD1-217ENST00000555953 INTS1Q8N201 2190 aaKnown RBP0.93□□□□□ -2.26
SCFD1-217ENST00000555953 SBF1O95248 1867 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 ZNF106Q9H2Y7 1883 aaKnown RBP0.92□□□□□ -2.26
SCFD1-217ENST00000555953 MED13Q9UHV7 2174 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 FAM159BA6NKW6 160 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 HAND1O96004 215 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 RBP1P09455 135 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 COX6A1P12074 109 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 GNG10P50151 68 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 HIST1H3AP68431 136 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 H3F3AP84243 136 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 CDK10Q15131 360 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 IAH1Q2TAA2 248 aaPredicted RBP0.92□□□□□ -2.26
SCFD1-217ENST00000555953 TMEM97Q5BJF2 176 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 HACD4Q5VWC8 232 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 UNQ6190/PRO20217Q6UXQ8 127 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 Q6ZSA8 131 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 ZNF826PQ6ZT77 177 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 OR4D11Q8NGI4 311 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 SIGMAR1Q99720 223 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 ADAT1Q9BUB4 502 aaKnown RBP0.92□□□□□ -2.26
SCFD1-217ENST00000555953 TRIM4Q9C037 500 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 FBXO5Q9UKT4 447 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 LAMB2P55268 1798 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 CAMSAP1Q5T5Y3 1602 aa0.92□□□□□ -2.26
SCFD1-217ENST00000555953 TTC21AQ8NDW8 1320 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 MICAL3Q7RTP6 2002 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 IGKV2-40A0A087WW87 121 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 IGKV3D-7A0A0C4DH55 119 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 IGKV3OR2-268A0A0C4DH90 116 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 CLDN25C9JDP6 229 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 TMEM238C9JI98 176 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 BUB1B-PAK6H3BSN5 160 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 C19orf84I3L1E1 186 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 IGKV2D-40P01614 121 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 ANGP03950 147 aaKnown RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 SHBGP04278 402 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 HTR1AP08908 422 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 CST2P09228 141 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 SMIM10L2AP0DMW4 78 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 SMIM10L2BP0DMW5 78 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 SRIP30626 198 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 CDC42P60953 191 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 C10orf55Q5SWW7 151 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 LCN15Q6UWW0 184 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 CLVS1Q8IUQ0 354 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 KRT222Q8N1A0 295 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 C12orf45Q8N5I9 185 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 GDPD1Q8N9F7 314 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 WFDC11Q8NEX6 87 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 OR52L1Q8NGH7 329 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 CT55Q8WUE5 264 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 HOPXQ9BPY8 73 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-217ENST00000555953 MIXL1Q9H2W2 232 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 SLC39A9Q9NUM3 307 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 ERGIC3Q9Y282 383 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 MYOFQ9NZM1 2061 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 DENND4CQ5VZ89 1909 aa0.91□□□□□ -2.26
SCFD1-217ENST00000555953 COL6A6A6NMZ7 2263 aa0.9□□□□□ -2.26
SCFD1-217ENST00000555953 A0A0D9SG52 128 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 hADV38S2A0JD32 116 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 OR2J2O76002 312 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 OR5F1O95221 314 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 TCL1BO95988 128 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 C12orf74Q32Q52 190 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 KHDC3LQ587J8 217 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 SPANXN5Q5MJ07 72 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 OOSP2Q86WS3 158 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 BPIFA4PQ86YQ2 179 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 HIST3H2BBQ8N257 126 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 Q8N2B8 174 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 EXOC3-AS1Q8N2X6 119 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 SIGLECL1Q8N7X8 197 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 DNAJC9Q8WXX5 260 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 RETNLBQ9BQ08 111 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 GINS4Q9BRT9 223 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 C9orf16Q9BUW7 83 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 CCDC90BQ9GZT6 254 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 RNF122Q9H9V4 155 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 SOX21Q9Y651 276 aaPredicted RBP0.9□□□□□ -2.27
SCFD1-217ENST00000555953 MED1Q15648 1581 aaPredicted RBP0.9□□□□□ -2.27
SCFD1-217ENST00000555953 RP1P56715 2156 aa0.9□□□□□ -2.27
SCFD1-217ENST00000555953 MED12LQ86YW9 2145 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 IGKV1D-42A0A075B6H8 117 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 TMEM212A6NML5 194 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 PIAS1O75925 651 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 OR2B3O76000 313 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 ZNF682O95780 498 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 CTSDP07339 412 aaPredicted RBP0.89□□□□□ -2.27
SCFD1-217ENST00000555953 UBBP0CG47 229 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 SMIM17P0DL12 118 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 IL9P15248 144 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 S100A4P26447 101 aaKnown RBP0.89□□□□□ -2.27
SCFD1-217ENST00000555953 S100A5P33763 92 aa0.89□□□□□ -2.27
SCFD1-217ENST00000555953 CDK5R1Q15078 307 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms