RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 HBBP68871 147 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 C18orf15Q96N68 181 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 COL4A6Q14031 1691 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 IGKV3D-20A0A0C4DH25 116 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 A6NNC1 897 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 LYPD3O95274 346 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 IGFBP3P17936 291 aaPredicted RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 HINT1P49773 126 aaPredicted RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 GNG5P63218 68 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 TMEM42Q69YG0 159 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 RPRMLQ8N4K4 120 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 PIP4P2Q8N4L2 257 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 COPS9Q8WXC6 57 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 SFRP2Q96HF1 295 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 RCC1LQ96I51 464 aaKnown RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 KCNS1Q96KK3 526 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 RTBDNQ9BSG5 229 aaPredicted RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 GPR179Q6PRD1 2367 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 AKAP6Q13023 2319 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 TGIF2-C20orf24A0A0A6YYL0 155 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 E7EQL1 145 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 TRGC2P03986 189 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 CACNG7P62955 275 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 MINOS1Q5TGZ0 78 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 RUSC1-AS1Q66K80 236 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 SIGLEC15Q6ZMC9 328 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 LHFPL4Q7Z7J7 247 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 CD177Q8N6Q3 437 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 OR10W1Q8NGF6 305 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 NABP1Q96AH0 204 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 PRELID3AQ96N28 172 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 BEX4Q9NWD9 120 aaPredicted RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 F11RQ9Y624 299 aaKnown RBP6.8□□□□□ -1.32
SYNE2-220ENST00000555612 MINOS1-NBL1R4GNA1 71 aa6.8□□□□□ -1.32
SYNE2-220ENST00000555612 FMC1Q96HJ9 113 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 MRPS16Q9Y3D3 137 aaKnown RBP6.79□□□□□ -1.32
SYNE2-220ENST00000555612 FBLL1A6NHQ2 334 aaKnown RBP6.79□□□□□ -1.32
SYNE2-220ENST00000555612 LILRA1O75019 489 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 CD8AP01732 235 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 DANCRP0C864 163 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 DUTP33316 252 aaKnown RBP6.79□□□□□ -1.32
SYNE2-220ENST00000555612 FER1L6-AS1Q8NA97 138 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 OR9G4Q8NGQ1 327 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 SCO2A0A1W2PP80 73 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 CLPSP04118 112 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 CCL1P22362 96 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 TEX38Q6PEX7 206 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 HEPN1Q6WQI6 88 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 ZNF257Q9Y2Q1 563 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 SOX21Q9Y651 276 aaPredicted RBP6.79□□□□□ -1.32
SYNE2-220ENST00000555612 PTPRFP10586 1907 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 A8MXK9 166 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 MSMBP08118 114 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 GAS1P54826 345 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 LYPD2Q6UXB3 125 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 PRR32B1ATL7 298 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 STAG3L2P0CL84 134 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 TMEM144Q7Z5S9 345 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 CIARTQ8N365 385 aaPredicted RBP6.79□□□□□ -1.32
SYNE2-220ENST00000555612 KLHDC3Q9BQ90 382 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 TMEM160Q9NX00 188 aa6.79□□□□□ -1.32
SYNE2-220ENST00000555612 ZNF383Q8NA42 475 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 OTORQ9NRC9 128 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 ATP5G3P48201 142 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 BIVMQ86UB2 503 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 CHCHD5Q9BSY4 110 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 IGKV1-12A0A0C4DH73 117 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 M0R1W7 72 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 NDUFS8O00217 210 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 IGKV1D-12P01611 117 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 PRCDQ00LT1 54 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 KLF17Q5JT82 389 aaPredicted RBP6.78□□□□□ -1.32
SYNE2-220ENST00000555612 PLA2G2CQ5R387 149 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 DTX2Q86UW9 622 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 SLC17A3O00476 420 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 PYYP10082 97 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 CMC4P56277 68 aaPredicted RBP6.78□□□□□ -1.32
SYNE2-220ENST00000555612 GAFA1Q96PS6 74 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 SCGB3A1Q96QR1 104 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 J3QRE1 110 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 SAA4P35542 130 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 FXYD7P58549 80 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 B3GALT5-AS1P59052 145 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 RPL15P61313 204 aaKnown RBP6.78□□□□□ -1.32
SYNE2-220ENST00000555612 Q5BKY6 102 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 OR10J3Q5JRS4 329 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 THSD7BQ9C0I4 1608 aa6.78□□□□□ -1.32
SYNE2-220ENST00000555612 TRGV11A0A075B6L2 103 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 H3BRM9 83 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 PSPNO60542 156 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 ZNF688P0C7X2 276 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 NAT1P18440 290 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 PPIFP30405 207 aaKnown RBP6.77□□□□□ -1.32
SYNE2-220ENST00000555612 TMEM136Q6ZRR5 245 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 BEND2Q8NDZ0 799 aa6.77□□□□□ -1.32
SYNE2-220ENST00000555612 ZNF646O15015 1829 aaPredicted RBP6.77□□□□□ -1.33
SYNE2-220ENST00000555612 SIP14410 1827 aa6.77□□□□□ -1.33
SYNE2-220ENST00000555612 PDCD11Q14690 1871 aaKnown RBP6.77□□□□□ -1.33
SYNE2-220ENST00000555612 ANKRD36A6QL64 1941 aa6.77□□□□□ -1.33
SYNE2-220ENST00000555612 TRAV21A0A0B4J279 112 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms