RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GPR146Q96CH1 333 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 GINS3Q9BRX5 216 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 C20orf24Q9BUV8 137 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 WFDC10AQ9H1F0 79 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 MCUBQ9NWR8 336 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 CACNG5Q9UF02 275 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 SHPKQ9UHJ6 478 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 DUXBA0A1W2PPF3 345 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 CCDC160A6NGH7 325 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 CHEK1O14757 476 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 ANXA3P12429 323 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 BMI1P35226 326 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 C2orf83Q53S99 150 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 PYDC2Q56P42 97 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 ZNF600Q6ZNG1 722 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 TOMM5Q8N4H5 51 aa11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 RNASEH2CQ8TDP1 164 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 SLC25A21Q9BQT8 299 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 FNDC4Q9H6D8 234 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-209ENST00000554872 TRAV14DV4A0A0A6YYC5 116 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 OR4C46A6NHA9 309 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 CLN5O75503 358 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 SCGB2A1O75556 95 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM50AO95807 157 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 SULT1A3P0DMM9 295 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 SULT1A4P0DMN0 295 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 CCR6P51684 374 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM128Q5BJH2 165 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 FAM90A2PQ658T7 463 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM116Q8NCL8 245 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 RHPN1-AS1Q9BWJ2 59 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 GGTLC1Q9BX51 225 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 VSIRQ9H7M9 311 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 ZFAND3Q9H8U3 227 aa11.96□□□□□ -0.49
CCDC88C-209ENST00000554872 RPS10-NUDT3A0A1W2PQS6 291 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 IGHV3-48P01763 117 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 OPRK1P41145 380 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 SPANXN2Q5MJ10 180 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 CASC10Q5T4H9 136 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 TOMM20LQ6UXN7 152 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 NOXA1Q86UR1 476 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 LGI3Q8N145 548 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 LRTM2Q8N967 370 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 SLC24A4Q8NFF2 622 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 HSPB7Q9UBY9 170 aa11.95□□□□□ -0.5
CCDC88C-209ENST00000554872 TRAV30A0A087WSZ9 112 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 LOC102724200A0A096LPH7 203 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 YIF1AO95070 293 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 SLC25A4P12235 298 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 LYL1P12980 280 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 ATP5IP56385 69 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 TNFRSF9Q07011 255 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 SMCO1Q147U7 214 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 ODF3L2Q3SX64 289 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 RNF2Q99496 336 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 SRRQ9GZT4 340 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 HEYLQ9NQ87 328 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 SELENOKQ9Y6D0 94 aa11.94□□□□□ -0.5
CCDC88C-209ENST00000554872 IGHV3OR16-8A0A075B7F1 116 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 TRAV2A0A0B4J234 112 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 A0A1B0GU03 582 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 ZNF207O43670 478 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 IGKV1-17P01599 117 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 SLC25A6P12236 298 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 AKR1C4P17516 323 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 CMC4P56277 68 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 MRPL36Q9P0J6 103 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 TP53TG1Q9Y2A0 90 aa11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 PUS1Q9Y606 427 aaKnown RBP eCLIP11.93□□□□□ -0.5
CCDC88C-209ENST00000554872 KIR2DL5BA0A0G2JN68 375 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 KIR2DL5BA0A0G2JPC4 375 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 CEBPZOSA8MTT3 80 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 NPY1RP25929 384 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 UBE2MP61081 183 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 ETFRF1Q6IPR1 90 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 LYZL2Q7Z4W2 148 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 KIR2DL5AQ8N109 375 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 KIR2DL5BQ8NHK3 375 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 TMEM170AQ8WVE7 144 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 TMEM231Q9H6L2 316 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 U3KQ87 197 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 CSMD3Q7Z407 3707 aa11.92□□□□□ -0.5
CCDC88C-209ENST00000554872 UBE2CO00762 179 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 PITX3O75364 302 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 IGLC1P0CG04 106 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 CRYBB3P26998 211 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 APOC4P55056 127 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 YPEL3P61236 119 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 RBMS2Q15434 407 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 PRSS54Q6PEW0 395 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 Q6ZWC4 215 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 OR1S2Q8NGQ3 325 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 RETNQ9HD89 108 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 PRR13Q9NZ81 148 aa11.91□□□□□ -0.5
CCDC88C-209ENST00000554872 A0A1W2PS18 150 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 NAP1L6A6NFF2 107 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 FAM90A26D6RGX4 464 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 TMED4Q7Z7H5 227 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 WFDC3Q8IUB2 231 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 DTD1Q8TEA8 209 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms