RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ATP5J2P56134 94 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 C5orf64Q2M2E5 130 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 SPATA31B1PQ5VZV4 182 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 OR4F5Q8NH21 305 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 OR4F4Q96R69 305 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 RNF2Q99496 336 aa20.98■□□□□ 0.95
CCDC88C-205ENST00000553403 A0A087WWC5 75 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 TCRBV4S1A1TA0A5B7 111 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 B4DEV8 164 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 CNIH1O95406 144 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 OR5G3P0C626 314 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 ATF4P18848 351 aaPredicted RBP20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 GCHFRP30047 84 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 SELENOTP62341 195 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 FAM78BQ5VT40 261 aa20.97■□□□□ 0.95
CCDC88C-205ENST00000553403 C11orf94C9JXX5 98 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 C17orf50Q8WW18 174 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 SDF2L1Q9HCN8 221 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 IGKV1D-37A0A075B6S9 117 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 COLCA2A8K830 154 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 ZNF727A8MUV8 499 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 PDE6DO43924 150 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 GATA2P23769 480 aaPredicted RBP20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 CD24P25063 80 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 RND2P52198 227 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 C22orf15Q8WYQ4 148 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 SLC25A33Q9BSK2 321 aa20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 TECRQ9NZ01 308 aaKnown RBP20.96■□□□□ 0.95
CCDC88C-205ENST00000553403 CLN5O75503 358 aa20.95■□□□□ 0.94
CCDC88C-205ENST00000553403 PAX8Q06710 450 aa20.95■□□□□ 0.94
CCDC88C-205ENST00000553403 MIR17HGQ75NE6 70 aa20.95■□□□□ 0.94
CCDC88C-205ENST00000553403 MRPL32Q9BYC8 188 aaKnown RBP20.95■□□□□ 0.94
CCDC88C-205ENST00000553403 MRPL36Q9P0J6 103 aaKnown RBP20.95■□□□□ 0.94
CCDC88C-205ENST00000553403 IGHV4-61A0A0C4DH41 118 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 F6UZH7 168 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 FXYD3Q14802 87 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 TMEM116Q8NCL8 245 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 OR1L6Q8NGR2 347 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 AJUBAQ96IF1 538 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 NAT8Q9UHE5 227 aa20.94■□□□□ 0.94
CCDC88C-205ENST00000553403 PSMB11A5LHX3 300 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 APELAP0DMC3 54 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 PAX1P15863 534 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 TAS2R45P59539 299 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 TRGV9Q99603 122 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 SMIM7Q9BQ49 75 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 LOC105371267A0A1B0GV96 52 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 COX6B1P14854 86 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 CTRB1P17538 263 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 UBE2G2P60604 165 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 FBLN7Q53RD9 439 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 CST9LP1Q5W188 147 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 CTRB2Q6GPI1 263 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 OR1L4Q8NGR5 311 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 ARL2-SNX15V9GYD0 113 aa20.93■□□□□ 0.94
CCDC88C-205ENST00000553403 DCHS2Q6V1P9 2916 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 FAM106CPP0CH98 169 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 TMEM11P17152 192 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 ZNF562Q6V9R5 426 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 PFDN5Q99471 154 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 WNT10AQ9GZT5 417 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 PARLQ9H300 379 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 DNAJC4Q9NNZ3 241 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 DMRT1Q9Y5R6 373 aa20.92■□□□□ 0.94
CCDC88C-205ENST00000553403 NPFFO15130 113 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 IGHV3-48P01763 117 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 BRS3P32247 399 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 SAA4P35542 130 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 ATP5G3P48201 142 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 DSCR9P59020 149 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 TMEM241Q24JQ0 296 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 PQLC2Q6ZP29 291 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 C19orf35Q6ZS72 473 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 TMEM37Q8WXS4 190 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 RPUSD4Q96CM3 377 aaKnown RBP20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 TMEM167BQ9NRX6 74 aa20.91■□□□□ 0.94
CCDC88C-205ENST00000553403 TNFRSF19Q9NS68 423 aa20.9■□□□□ 0.94
CCDC88C-205ENST00000553403 C1RLQ9NZP8 487 aa20.9■□□□□ 0.94
CCDC88C-205ENST00000553403 PLXNB1O43157 2135 aa20.9■□□□□ 0.94
CCDC88C-205ENST00000553403 OR2C1O95371 312 aa20.89■□□□□ 0.94
CCDC88C-205ENST00000553403 C8orf88P0DMB2 117 aa20.89■□□□□ 0.94
CCDC88C-205ENST00000553403 BPIFB3P59826 476 aa20.89■□□□□ 0.94
CCDC88C-205ENST00000553403 ZNF90Q03938 601 aa20.89■□□□□ 0.94
CCDC88C-205ENST00000553403 IGHV4-30-2A0A087WSY4 118 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 CENPVL3A0A0U1RRI6 287 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 I3L2K1 104 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 COX7A2P2O60397 106 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 MT-ND4LP03901 98 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 ZNF674Q2M3X9 581 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 HIST1H2BAQ96A08 127 aa20.89■□□□□ 0.93
CCDC88C-205ENST00000553403 NBPF19A0A087WUL8 3843 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 CXorf65A6NEN9 183 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 NCBP2LA6PVI3 153 aaKnown RBP20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 NPPCP23582 126 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 CX3CL1P78423 397 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 OR4X1Q8NH49 305 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 ISOC2Q96AB3 205 aa20.88■□□□□ 0.93
CCDC88C-205ENST00000553403 FOLR2P14207 255 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 ARPC1AQ92747 370 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 PERPQ96FX8 193 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms