RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TPPP3Q9BW30 176 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 RAB9BQ9NP90 201 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 A0A1W2PPI3 338 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 C22orf46C9J442 243 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 RNASE2P10153 161 aaKnown RBP4.52□□□□□ -1.69
LIMA1-215ENST00000552823 IER3P46695 156 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 ADORA2A-AS1P86434 159 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 MAJINQ3KP22 176 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 OR8I2Q8N0Y5 310 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 FAM169BQ8N8A8 192 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 OR4C13Q8NGP0 309 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 MALSU1Q96EH3 234 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 ADTRPQ96IZ2 230 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 P2RX4Q99571 388 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM133Q9H2Q1 129 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 GAR1Q9NY12 217 aaKnown RBP4.52□□□□□ -1.69
LIMA1-215ENST00000552823 WASHC3Q9Y3C0 194 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 MSRB2Q9Y3D2 182 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TRAPPC1Q9Y5R8 145 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 MUC21A0A0G2JKD1 596 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 MUC21A0A140T8X8 626 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 A6NJY4 79 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 B9A039 149 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 TIMM23O14925 209 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 GNLYP22749 145 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 KIR2DS2P43631 304 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 RPL27AP46776 148 aaKnown RBP4.51□□□□□ -1.69
LIMA1-215ENST00000552823 PRCDQ00LT1 54 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 MUC21Q5SSG8 566 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 IGF2-ASQ6U949 168 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 MRPL41Q8IXM3 137 aaKnown RBP4.51□□□□□ -1.69
LIMA1-215ENST00000552823 Q8N7P7 452 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 NUP37Q8NFH4 326 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 OR10G8Q8NGN5 311 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 FAM222BQ8WU58 562 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM14BQ9NUH8 114 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 PRRC2AP48634 2157 aaKnown RBP4.51□□□□□ -1.69
LIMA1-215ENST00000552823 ITPR1Q14643 2758 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 HIVEP2P31629 2446 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 DOPEY1Q5JWR5 2465 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV2-26A0A0B4J1V2 119 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 TRAV1-1A0A0B4J248 108 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV3-66A0A0C4DH42 116 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 HELTA6NFD8 242 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 CXorf1O96002 111 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 FABP1P07148 127 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 CAMPP49913 170 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 KLRB1Q12918 225 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 IGFL4Q6B9Z1 124 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 DPPA3Q6W0C5 159 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 CYP2G1PQ6ZSU1 146 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 C1orf174Q8IYL3 243 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 OR8B3Q8NGG8 313 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 OR8B2Q96RD0 313 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 JMJD1CQ15652 2540 aa4.51□□□□□ -1.69
LIMA1-215ENST00000552823 TRAV8-1A0A0A6YYK1 113 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 A0A1B0GW64 132 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 A0A1W2PPR1 153 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 MT-CO2P00403 227 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 STAG3L2P0CL84 134 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 STAG3L3P0CL85 134 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 CA7P43166 264 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 GNG4P50150 75 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 CD69Q07108 199 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PMS2P11Q13670 270 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 FBLN7Q53RD9 439 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 CENPWQ5EE01 88 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PYY3Q5JQD4 70 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 LDLRAD2Q5SZI1 272 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TEX36Q5VZQ5 186 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 LINC01551Q86U37 167 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM256Q8N2U0 113 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TCTEX1D1Q8N7M0 179 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 NRGNQ92686 78 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 MANBALQ9NQG1 85 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TIMM9Q9Y5J7 89 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ANKRD17O75179 2603 aaKnown RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TMSB15BA0A087X1C1 80 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 CXorf65A6NEN9 183 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 IFITM10A6NMD0 228 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF705FA8MVS1 300 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 SLC25A5P05141 298 aaKnown RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF705DP0CH99 300 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF705BP0CI00 300 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 IL3RAP26951 378 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 C10orf113Q5VZT2 155 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 LINC00305Q7Z4B0 112 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 MS4A10Q96PG2 267 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PFDN5Q99471 154 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 GGACTQ9BVM4 153 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 CLEC7AQ9BXN2 247 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 RAB1BQ9H0U4 201 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 FOXA2Q9Y261 457 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 IGKV3-7A0A075B6H7 116 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 A1L4Q6 167 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PGPA6NDG6 321 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF207O43670 478 aaKnown RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 SCGB1D1O95968 90 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PRB1P04280 392 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 BTF3P20290 206 aaKnown RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms