RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FNDC4Q9H6D8 234 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 TPSG1Q9NRR2 321 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 TRAV34A0A0B4J273 112 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 APELAP0DMC3 54 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 G0S2P27469 103 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 UBE2L3P68036 154 aaKnown RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 WT1-ASQ06250 92 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 IBA57Q5T440 356 aaKnown RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 LYPD2Q6UXB3 125 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF705AQ6ZN79 300 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM136Q6ZRR5 245 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF833PQ6ZTB9 187 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 WFDC8Q8IUA0 241 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 OR5AU1Q8NGC0 362 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SLC35E1Q96K37 410 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 IGF2BP2-AS1Q96M15 143 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SFXN3Q9BWM7 321 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SAMD10Q9BYL1 202 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 COMMD5Q9GZQ3 224 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 LINC00574Q9H8X3 128 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 CHODLQ9H9P2 273 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 NDUFA4L2Q9NRX3 87 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 BET1LQ9NYM9 111 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SH3BGRL2Q9UJC5 107 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 FBXL7Q9UJT9 491 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 LY96Q9Y6Y9 160 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 ARHGAP32A7KAX9 2087 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 hADV38S2A0JD32 116 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 FNDC10F2Z333 226 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 H0YJW9 148 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TCAPO15273 167 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 C8orf88P0DMB2 117 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 IRF2P14316 349 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 GRNP28799 593 aaKnown RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 SELENOVP59797 346 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 CX3CL1P78423 397 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TIGITQ495A1 244 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 LBHQ53QV2 105 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TEX36Q5VZQ5 186 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM200BQ69YZ2 307 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 PATE2Q6UY27 113 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 RBMXL3Q8N7X1 1067 aaKnown RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 OR1L8Q8NGR8 309 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 H1FXQ92522 213 aaKnown RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 RAB9BQ9NP90 201 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TLN1Q9Y490 2541 aaKnown RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TRAV9-1A0A075B6T8 112 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 IGHV3-72A0A0B4J1Y9 119 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 DPRXA6NFQ7 191 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TM4SF5O14894 197 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 ESDP10768 282 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 PMCHP20382 165 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 SRIP30626 198 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 PPOXP50336 477 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 RPL8P62917 257 aaKnown RBP6.06□□□□□ -1.44
LIMA1-213ENST00000552720 PAFAH1B2P68402 229 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 TM4SF20Q53R12 229 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 OR5B3Q8NH48 314 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 NPIPB3Q92617 1050 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 GNB1LQ9BYB4 327 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF355PQ9NSJ1 428 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 LINC00312Q9Y6C7 94 aa6.06□□□□□ -1.44
LIMA1-213ENST00000552720 IGKV1D-37A0A075B6S9 117 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 A6NNC1 897 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 BMPR1BO00238 502 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 DLL1O00548 723 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 RAB4AP20338 218 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 TNFSF4P23510 183 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 TDGF1P3P51864 188 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 TAS2R45P59539 299 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 KRTDAPP60985 99 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 RANP62826 216 aaKnown RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 GNG5P63218 68 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 Q0VG73 95 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ADIPOQQ15848 244 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 TEX43Q6ZNM6 134 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 Q6ZS92 163 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 FAM19A2Q8N3H0 131 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 Q8N976 141 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 CCL17Q92583 94 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF714Q96N38 554 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 NEU1Q99519 415 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF430Q9H8G1 570 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 OSTCQ9NRP0 149 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 TBL2Q9Y4P3 447 aaKnown RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 IGHV3-21A0A0B4J1V1 117 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 A0A1W2PRE2 83 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 M0R143 59 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 SLC25A17O43808 307 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 MOSP00540 346 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 APOA2P02652 100 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 GPX1P07203 203 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 CEACAM8P31997 349 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ERHP84090 104 aaKnown RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 SLAQ13239 276 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 PRR27Q6MZM9 219 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 OR5AN1Q8NGI8 311 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 OSR1Q8TAX0 266 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 FLYWCH2Q96CP2 140 aaKnown RBP6.05□□□□□ -1.44
LIMA1-213ENST00000552720 DNAJC4Q9NNZ3 241 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms