RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HOXA1P49639 335 aaPredicted RBP8.56□□□□□ -1.04
YBX3-216ENST00000544622 RELQ04864 619 aaPredicted RBP8.56□□□□□ -1.04
YBX3-216ENST00000544622 SMCO1Q147U7 214 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 RBMS2Q15434 407 aaKnown RBP8.56□□□□□ -1.04
YBX3-216ENST00000544622 LINC00299Q6ZSB3 139 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 TMED4Q7Z7H5 227 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 DUSP18Q8NEJ0 188 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 OR4X1Q8NH49 305 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 NEURL2Q9BR09 285 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 ENY2Q9NPA8 101 aa8.56□□□□□ -1.04
YBX3-216ENST00000544622 PIGBOS1A0A0B4J2F0 54 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 A0A1B0GU03 582 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 A6NHS1 94 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 TSPAN4O14817 238 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 GNG7O60262 68 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 CLN5O75503 358 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 SLC25A6P12236 298 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 IL7P13232 177 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 CD81P60033 236 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 UBE2MP61081 183 aaKnown RBP8.55□□□□□ -1.04
YBX3-216ENST00000544622 TNFRSF9Q07011 255 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 PPP1R1AQ13522 171 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 WWC2-AS2Q96NR7 200 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 HEYLQ9NQ87 328 aaPredicted RBP8.55□□□□□ -1.04
YBX3-216ENST00000544622 SMPXQ9UHP9 88 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 SELENOKQ9Y6D0 94 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 RYR3Q15413 4870 aa8.55□□□□□ -1.04
YBX3-216ENST00000544622 IGHV3OR16-8A0A075B7F1 116 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 OR11H12B2RN74 326 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 CHEK1O14757 476 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 PLA2G10O15496 165 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 GUCA2BQ16661 112 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 HAGHQ16775 308 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 TRIQKQ629K1 86 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 FAM90A2PQ658T7 463 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 TOMM20LQ6UXN7 152 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 CENPSQ8N2Z9 138 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 DEFB125Q8N687 156 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 TMEM116Q8NCL8 245 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 SLC24A4Q8NFF2 622 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 RNASEH2CQ8TDP1 164 aaKnown RBP8.54□□□□□ -1.04
YBX3-216ENST00000544622 SPAG8Q99932 426 aaPredicted RBP8.54□□□□□ -1.04
YBX3-216ENST00000544622 C7orf50Q9BRJ6 194 aaKnown RBP8.54□□□□□ -1.04
YBX3-216ENST00000544622 ZFAND3Q9H8U3 227 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 TMED3Q9Y3Q3 217 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 U3KQ87 197 aa8.54□□□□□ -1.04
YBX3-216ENST00000544622 TRAV14DV4A0A0A6YYC5 116 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 IGHV7-4-1A0A0J9YVY3 117 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 C9orf170A2RU37 121 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 RBMY1BA6NDE4 496 aaKnown RBP8.53□□□□□ -1.04
YBX3-216ENST00000544622 RBMY1EA6NEQ0 496 aaKnown RBP8.53□□□□□ -1.04
YBX3-216ENST00000544622 CEBPZOSA8MTT3 80 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 SCAF4O95104 1147 aaKnown RBP8.53□□□□□ -1.04
YBX3-216ENST00000544622 IGKV1-17P01599 117 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 RBMY1DP0C7P1 496 aaKnown RBP8.53□□□□□ -1.04
YBX3-216ENST00000544622 VAMP1P23763 118 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 OPRK1P41145 380 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 PRSS54Q6PEW0 395 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 ZNF600Q6ZNG1 722 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 RBPMS2Q6ZRY4 209 aaKnown RBP8.53□□□□□ -1.04
YBX3-216ENST00000544622 DTD1Q8TEA8 209 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 RNF2Q99496 336 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 C20orf24Q9BUV8 137 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 WFDC10AQ9H1F0 79 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 HIPK2Q9H2X6 1198 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 RBKSQ9H477 322 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 FLVCR2Q9UPI3 526 aa8.53□□□□□ -1.04
YBX3-216ENST00000544622 PUS1Q9Y606 427 aaKnown RBP eCLIP8.53□□□□□ -1.04
YBX3-216ENST00000544622 TRAV30A0A087WSZ9 112 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 FAM90A26D6RGX4 464 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 ZNF207O43670 478 aaKnown RBP8.52□□□□□ -1.05
YBX3-216ENST00000544622 YIF1AO95070 293 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 NXPH3O95157 252 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 OR4E1P0C645 316 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 IGLC1P0CG04 106 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 NPY1RP25929 384 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 ATP5IP56385 69 aaPredicted RBP8.52□□□□□ -1.05
YBX3-216ENST00000544622 LAMTOR1Q6IAA8 161 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 SLC16A13Q7RTY0 426 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 LILRB2Q8N423 598 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 RCHY1Q96PM5 261 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 CITED4Q96RK1 184 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 FAM110AQ9BQ89 295 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 RHPN1-AS1Q9BWJ2 59 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 VSIRQ9H7M9 311 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 TUBA4BQ9H853 241 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 ZMAT4Q9H898 229 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 STARD9Q9P2P6 4700 aa8.52□□□□□ -1.05
YBX3-216ENST00000544622 RPS10-NUDT3A0A1W2PQS6 291 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 CENPXA8MT69 81 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 APOHP02749 345 aaPredicted RBP8.51□□□□□ -1.05
YBX3-216ENST00000544622 SLC25A4P12235 298 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 INPP1P49441 399 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 DHRS2Q13268 280 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 NOXA1Q86UR1 476 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 OR52B4Q8NGK2 314 aa8.51□□□□□ -1.05
YBX3-216ENST00000544622 LINC00854A0A1B0GVQ3 168 aa8.5□□□□□ -1.05
YBX3-216ENST00000544622 IFNA10P01566 189 aa8.5□□□□□ -1.05
YBX3-216ENST00000544622 HOXB5P09067 269 aa8.5□□□□□ -1.05
YBX3-216ENST00000544622 CRYBB3P26998 211 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms