RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LRTM2Q8N967 370 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 WFDC10AQ9H1F0 79 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 HSPB7Q9UBY9 170 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 CACFD1Q9UGQ2 172 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 RBMY1BA6NDE4 496 aaKnown RBP10.61□□□□□ -0.71
USP28-209ENST00000540925 RBMY1EA6NEQ0 496 aaKnown RBP10.61□□□□□ -0.71
USP28-209ENST00000540925 PITX3O75364 302 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 TMEM50AO95807 157 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 RBMY1DP0C7P1 496 aaKnown RBP10.61□□□□□ -0.71
USP28-209ENST00000540925 ANXA3P12429 323 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 NPBWR1P48145 328 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 CCR6P51684 374 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 MLANAQ16655 118 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 ANKRD55Q3KP44 614 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 LGI3Q8N145 548 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 DUSP18Q8NEJ0 188 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 OR4X1Q8NH49 305 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 SPAG8Q99932 426 aaPredicted RBP10.61□□□□□ -0.71
USP28-209ENST00000540925 ZFAND3Q9H8U3 227 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 ENY2Q9NPA8 101 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 SMPXQ9UHP9 88 aa10.61□□□□□ -0.71
USP28-209ENST00000540925 IGHV7-4-1A0A0J9YVY3 117 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 DUXBA0A1W2PPF3 345 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 OR11H12B2RN74 326 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 ZNF207O43670 478 aaKnown RBP10.6□□□□□ -0.71
USP28-209ENST00000540925 GNG7O60262 68 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 CLN5O75503 358 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 SCAF4O95104 1147 aaKnown RBP10.6□□□□□ -0.71
USP28-209ENST00000540925 BTCP35070 178 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 TNFRSF9Q07011 255 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 SMCO1Q147U7 214 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 TOMM20LQ6UXN7 152 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 TMED4Q7Z7H5 227 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 C20orf24Q9BUV8 137 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 TUBA4BQ9H853 241 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 HEYLQ9NQ87 328 aaPredicted RBP10.6□□□□□ -0.71
USP28-209ENST00000540925 BIRC6Q9NR09 4857 aa10.6□□□□□ -0.71
USP28-209ENST00000540925 A0A1B0GU03 582 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 CHEK1O14757 476 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 SFT2D2O95562 160 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 IGKV1-17P01599 117 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 SLC25A6P12236 298 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 PPP1R1AQ13522 171 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 RBMS2Q15434 407 aaKnown RBP10.59□□□□□ -0.71
USP28-209ENST00000540925 FAM90A2PQ658T7 463 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 ZNF600Q6ZNG1 722 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 RBPMS2Q6ZRY4 209 aaKnown RBP10.59□□□□□ -0.71
USP28-209ENST00000540925 SLC16A13Q7RTY0 426 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 SLC24A4Q8NFF2 622 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 RNASEH2CQ8TDP1 164 aaKnown RBP10.59□□□□□ -0.71
USP28-209ENST00000540925 ZMAT4Q9H898 229 aa10.59□□□□□ -0.71
USP28-209ENST00000540925 EPPK1P58107 5090 aaKnown RBP10.59□□□□□ -0.71
USP28-209ENST00000540925 PIGBOS1A0A0B4J2F0 54 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 NAP1L6A6NFF2 107 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 CEBPZOSA8MTT3 80 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 NDUFB6O95139 128 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 OPRK1P41145 380 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 UBE2MP61081 183 aaKnown RBP10.58□□□□□ -0.72
USP28-209ENST00000540925 TRIQKQ629K1 86 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 PRSS54Q6PEW0 395 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 CENPSQ8N2Z9 138 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 TMEM116Q8NCL8 245 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 OR52B4Q8NGK2 314 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 CITED4Q96RK1 184 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 RNF2Q99496 336 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 FAM110AQ9BQ89 295 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 SPATA25Q9BR10 227 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 RHPN1-AS1Q9BWJ2 59 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 HIPK2Q9H2X6 1198 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 VSIRQ9H7M9 311 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 SRD5A3Q9H8P0 318 aa10.58□□□□□ -0.72
USP28-209ENST00000540925 PUS1Q9Y606 427 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP28-209ENST00000540925 TRAV14DV4A0A0A6YYC5 116 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 YIF1AO95070 293 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 NXPH3O95157 252 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 IL7P13232 177 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 ODF3L2Q3SX64 289 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 LAMTOR1Q6IAA8 161 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 DTD1Q8TEA8 209 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 LYSTQ99698 3801 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 RBKSQ9H477 322 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 EDA2RQ9HAV5 297 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 U3KQ87 197 aa10.57□□□□□ -0.72
USP28-209ENST00000540925 RPS10-NUDT3A0A1W2PQS6 291 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 IGLC1P0CG04 106 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 SLC25A4P12235 298 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 VAMP1P23763 118 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 NPY1RP25929 384 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 LILRB2Q8N423 598 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 C7orf50Q9BRJ6 194 aaKnown RBP10.56□□□□□ -0.72
USP28-209ENST00000540925 GINS3Q9BRX5 216 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 TMED3Q9Y3Q3 217 aa10.56□□□□□ -0.72
USP28-209ENST00000540925 FAM90A26D6RGX4 464 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 PLA2G10O15496 165 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 APOHP02749 345 aaPredicted RBP10.55□□□□□ -0.72
USP28-209ENST00000540925 ATP5IP56385 69 aaPredicted RBP10.55□□□□□ -0.72
USP28-209ENST00000540925 TIGITQ495A1 244 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 LINC00299Q6ZSB3 139 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 NOXA1Q86UR1 476 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 ST8SIA2Q92186 375 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms