RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CACNA1BQ00975 2339 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 IGLC7A0M8Q6 106 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 LIPFP07098 398 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 AREGP15514 252 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 MIR17HGQ75NE6 70 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 THAP8Q8NA92 274 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 ANAPC16Q96DE5 110 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 ATRXP46100 2492 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 DLEU1O43261 78 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 SUB1P53999 127 aaKnown RBP eCLIP11.06□□□□□ -0.648e-14■■□□□ 13.4
RTN3-210ENST00000540798 PSG5Q15238 335 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 CST9LP1Q5W188 147 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 MMD2Q8IY49 270 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 C11orf52Q96A22 123 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 FAM210BQ96KR6 192 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 MALRD1Q5VYJ5 2156 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 SPTA1P02549 2419 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 IGHV3-72A0A0B4J1Y9 119 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 A8MWP6 167 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 TGOLN2O43493 480 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 LY6HO94772 140 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 LINC01551Q86U37 167 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 OR2T6Q8NHC8 308 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 ZNF503Q96F45 646 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 TIMD4Q96H15 378 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 SIGLEC9Q9Y336 463 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 INSIG2Q9Y5U4 225 aa11.06□□□□□ -0.64
RTN3-210ENST00000540798 NDUFB4O95168 129 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 PAX2Q02962 417 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 FAM78BQ5VT40 261 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 OR11H6Q8NGC7 330 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 SVIPQ8NHG7 77 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 RNF5Q99942 180 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 IGKV1D-37A0A075B6S9 117 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 ENSAO43768 121 aaKnown RBP11.05□□□□□ -0.64
RTN3-210ENST00000540798 MT-CO2P00403 227 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 CRYGCP07315 174 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 CD99P14209 185 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 CNTFRP26992 372 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 ZNF664Q8N3J9 261 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 DERL1Q9BUN8 251 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 CHODLQ9H9P2 273 aa11.05□□□□□ -0.64
RTN3-210ENST00000540798 A0A1W2PPR1 153 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 COMPP49747 757 aaPredicted RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 SAPCD1Q5SSQ6 148 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 LDLRAD2Q5SZI1 272 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 RNASE8Q8TDE3 154 aaKnown RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 M0R1W7 72 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 RAB4AP20338 218 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 GATA2P23769 480 aaPredicted RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 PRB3Q04118 309 aaPredicted RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 TMEM37Q8WXS4 190 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 MRPL32Q9BYC8 188 aaKnown RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 TECRQ9NZ01 308 aaKnown RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 TRBV20OR9-2A0A075B6H5 130 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 SCO2A0A1W2PP80 73 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 SSBP2P81877 361 aaPredicted RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 LBHQ53QV2 105 aaPredicted RBP11.04□□□□□ -0.64
RTN3-210ENST00000540798 TMEM167BQ9NRX6 74 aa11.04□□□□□ -0.64
RTN3-210ENST00000540798 COX7A1P24310 79 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 MFAP2P55001 183 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 RNF2Q99496 336 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 SLC25A33Q9BSK2 321 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 NDUFAF3Q9BU61 184 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 ONECUT1Q9UBC0 465 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 ODF3BA8MYP8 253 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 TEX22C9J3V5 150 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 H7BYZ3 331 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 TCF21O43680 179 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 RPL27AP46776 148 aaKnown RBP11.03□□□□□ -0.64
RTN3-210ENST00000540798 TPTE2P1Q5T6R2 138 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 HCP5Q6MZN7 132 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 PQLC2Q6ZP29 291 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 NAV3Q8IVL0 2385 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 MRPL41Q8IXM3 137 aaKnown RBP11.03□□□□□ -0.64
RTN3-210ENST00000540798 RPEQ96AT9 228 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 MRPL36Q9P0J6 103 aaKnown RBP11.03□□□□□ -0.64
RTN3-210ENST00000540798 USP24Q9UPU5 2620 aa11.03□□□□□ -0.64
RTN3-210ENST00000540798 TCRBV4S1A1TA0A5B7 111 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 ACTL6BO94805 426 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 GALR1P47211 349 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 C4orf17Q53FE4 359 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 ITLN2Q8WWU7 325 aaPredicted RBP11.02□□□□□ -0.64
RTN3-210ENST00000540798 ACY3Q96HD9 319 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 FAM167A-AS1Q96KT0 104 aa11.02□□□□□ -0.64
RTN3-210ENST00000540798 ZNF705GA8MUZ8 300 aaPredicted RBP11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BKO60814 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 TRGC2P03986 189 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BJP06899 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BOP23527 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BBP33778 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 SRP14P37108 136 aaKnown RBP11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BDP58876 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BCP62807 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST2H2BEQ16778 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.02□□□□□ -0.65
RTN3-210ENST00000540798 PPP1R27Q86WC6 154 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BHQ93079 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BNQ99877 126 aa11.02□□□□□ -0.65
RTN3-210ENST00000540798 HIST1H2BMQ99879 126 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms