RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 IFITM10A6NMD0 228 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 SLC25A48Q6ZT89 311 aaKnown RBP11.63□□□□□ -0.55
USP3-204ENST00000540797 VN1R17PQ8TDU5 208 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 TRBV20OR9-2A0A075B6H5 130 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 C10orf55Q5SWW7 151 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 H7C1H1 209 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 TRGC2P03986 189 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 Q5PR19 223 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 FMC1Q96HJ9 113 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 NLRC5Q86WI3 1866 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 ABCA4P78363 2273 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 DIRC3C9JPN6 131 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 TCTAP57738 103 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 ZNF585BQ52M93 769 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 RNF5Q99942 180 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 KLK15Q9H2R5 256 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 C5orf52A6NGY3 159 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 ETV2O00321 342 aaPredicted RBP11.62□□□□□ -0.55
USP3-204ENST00000540797 CD55P08174 381 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 SRD5A1P18405 259 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 MPZP25189 248 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 LEMD1Q68G75 181 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 BUB1B-PAK6H3BSN5 160 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 TNFSF13O75888 250 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 PAX1P15863 534 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 Q6P435 159 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 GLMPQ8WWB7 406 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 TNFRSF18Q9Y5U5 241 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 NAPSAO96009 420 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 NMUP48645 174 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 DPH3Q96FX2 82 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 FRMPD3Q5JV73 1810 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 TRGV2A0A075B6R0 118 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 SCO2A0A1W2PP80 73 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 RNF151Q2KHN1 245 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 OTORQ9NRC9 128 aa11.62□□□□□ -0.55
USP3-204ENST00000540797 TBL2Q9Y4P3 447 aaKnown RBP11.62□□□□□ -0.55
USP3-204ENST00000540797 TGIF2-C20orf24A0A0A6YYL0 155 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 BTCP35070 178 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 GTSCR1Q86UQ5 136 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 SDF2L1Q9HCN8 221 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 KIAA1671Q9BY89 1806 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 ID3Q02535 119 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 MARVELD3Q96A59 401 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 COQ2Q96H96 371 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 SCN8AQ9UQD0 1980 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 DUSP14O95147 198 aaKnown RBP11.61□□□□□ -0.55
USP3-204ENST00000540797 VENTXO95231 258 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 SRIP30626 198 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 HBBP68871 147 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 C15orf32Q32M92 178 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 KIAA1644Q3SXP7 199 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 WDR81Q562E7 1941 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 LDLRAD4O15165 306 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 ATP5G3P48201 142 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 OR1P1Q8NH06 330 aa11.61□□□□□ -0.55
USP3-204ENST00000540797 MBNL3Q9NUK0 354 aaKnown RBP11.6□□□□□ -0.55
USP3-204ENST00000540797 RNF222A6NCQ9 220 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 SAP30O75446 220 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 LEPROTL1O95214 131 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 C5orf64Q2M2E5 130 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 RNF144BQ7Z419 303 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 HSPB9Q9BQS6 159 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 MSMBP08118 114 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 LEPP41159 167 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 GTF2H5Q6ZYL4 71 aa11.6□□□□□ -0.55
USP3-204ENST00000540797 CIARTQ8N365 385 aaPredicted RBP11.6□□□□□ -0.55
USP3-204ENST00000540797 CXorf65A6NEN9 183 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 PTPRDP23468 1912 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 H0YJW9 148 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 C3orf36Q3SXR2 165 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 RNF126Q9BV68 326 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 ZFHX2Q9C0A1 2572 aaPredicted RBP11.59□□□□□ -0.55
USP3-204ENST00000540797 GRIFINA4D1Z8 144 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 FBLL1A6NHQ2 334 aaKnown RBP11.59□□□□□ -0.55
USP3-204ENST00000540797 MUC21A0A0G2JKD1 596 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 MUC21A0A140T8X8 626 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 MUC21Q5SSG8 566 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 PAM16Q9Y3D7 125 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 PRTN3P24158 256 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 SAA4P35542 130 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 FHL1Q13642 323 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 PAPPA-AS1Q5QFB9 102 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 MAPK1IP1LQ8NDC0 245 aa11.59□□□□□ -0.55
USP3-204ENST00000540797 GEMIN7Q9H840 131 aaKnown RBP11.59□□□□□ -0.55
USP3-204ENST00000540797 NOTCH4Q99466 2003 aa11.58□□□□□ -0.55
USP3-204ENST00000540797 TRBV6-6A0A0A6YYG2 114 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 TRBV9A0A0B4J1U6 114 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 GCSHP23434 173 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 OR4D5Q8NGN0 318 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 Q96MF0 132 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 TTC28Q96AY4 2481 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 OR4C5Q8NGB2 326 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 OR10AG1Q8NH19 301 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 FAM215AQ9Y5M1 114 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 GATA3P23771 443 aa11.58□□□□□ -0.56
USP3-204ENST00000540797 HEATR1Q9H583 2144 aaKnown RBP11.58□□□□□ -0.56
USP3-204ENST00000540797 PYYP10082 97 aa11.57□□□□□ -0.56
USP3-204ENST00000540797 LHFPL1Q86WI0 220 aa11.57□□□□□ -0.56
USP3-204ENST00000540797 LRTM2Q8N967 370 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms