RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 CT45A6P0DMU7 189 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CT45A5P0DMU8 189 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CT45A7P0DMV0 189 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CD24P25063 80 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 RPL8P62917 257 aaKnown RBP16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CORO2AQ92828 525 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CCL13Q99616 98 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 SLC25A2Q9BXI2 301 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 ZNF331Q9NQX6 463 aaPredicted RBP16.5■□□□□ 0.23
TMEM260-203ENST00000539559 LAMTOR2Q9Y2Q5 125 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 CORTO00230 105 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 UPK2O00526 184 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 C8orf88P0DMB2 117 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 CAMPP49913 170 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 BORCS7Q96B45 105 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 LINC00614P0C842 121 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 SAA1P0DJI8 122 aaPredicted RBP16.49■□□□□ 0.23
TMEM260-203ENST00000539559 REG1BP48304 166 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 GNG5P63218 68 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 Q56UQ5 140 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 SPACA3Q8IXA5 215 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 KIR3DL3Q8N743 410 aa16.49■□□□□ 0.23
TMEM260-203ENST00000539559 IZUMO1RA6ND01 250 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 FAM167A-AS1Q96KT0 104 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 PRNDQ9UKY0 176 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 TANC2Q9HCD6 1990 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 RAI1Q7Z5J4 1906 aaPredicted RBP16.48■□□□□ 0.23
TMEM260-203ENST00000539559 CEACAM4O75871 244 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 RNASE2P10153 161 aaKnown RBP16.48■□□□□ 0.23
TMEM260-203ENST00000539559 UNQ5815/PRO19632Q6UWF5 114 aa16.48■□□□□ 0.23
TMEM260-203ENST00000539559 CACNA1GO43497 2377 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 TAS2R45P59539 299 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 RPL19P84098 196 aaKnown RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 PMCHL1Q16048 86 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 ZNF71Q9NQZ8 489 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 MUC6Q6W4X9 2439 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 MAP1BP46821 2468 aaKnown RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 SH2D7A6NKC9 451 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 M0QZ24 198 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 C10orf55Q5SWW7 151 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 EBLN2Q6P2I7 272 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 RNASEKQ6P5S7 137 aaKnown RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 BHLHA15Q7RTS1 189 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-203ENST00000539559 RPH3ALQ9UNE2 315 aa16.47■□□□□ 0.23
TMEM260-203ENST00000539559 RELQ04864 619 aaPredicted RBP16.46■□□□□ 0.23
TMEM260-203ENST00000539559 NUP35Q8NFH5 326 aa16.46■□□□□ 0.23
TMEM260-203ENST00000539559 AMMECR1Q9Y4X0 333 aaPredicted RBP16.46■□□□□ 0.23
TMEM260-203ENST00000539559 DMXL2Q8TDJ6 3036 aa16.46■□□□□ 0.23
TMEM260-203ENST00000539559 A0A1W2PRE2 83 aa16.46■□□□□ 0.23
TMEM260-203ENST00000539559 SPATA12Q7Z6I5 190 aa16.46■□□□□ 0.23
TMEM260-203ENST00000539559 ST6GALNAC6Q969X2 333 aa16.46■□□□□ 0.23
TMEM260-203ENST00000539559 VWC2LB2RUY7 222 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 CD69Q07108 199 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 NUDT10Q8NFP7 164 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 NUDT11Q96G61 164 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 CLEC5AQ9NY25 188 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 HSBP1O75506 76 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 LHBP01229 141 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 STUMQ69YW2 141 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 ERASQ7Z444 233 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 ZADH2Q8N4Q0 377 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 SLC25A15Q9Y619 301 aa16.45■□□□□ 0.22
TMEM260-203ENST00000539559 ABCA1O95477 2261 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 M0R2Z0 102 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 MZT1Q08AG7 82 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 ZNF841Q6ZN19 808 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 C1orf162Q8NEQ5 155 aaPredicted RBP16.44■□□□□ 0.22
TMEM260-203ENST00000539559 ARL2-SNX15V9GYD0 113 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 CEP250Q9BV73 2442 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 CCL25O15444 150 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 SARAFQ96BY9 339 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 MRPL36Q9P0J6 103 aaKnown RBP16.44■□□□□ 0.22
TMEM260-203ENST00000539559 PROCRQ9UNN8 238 aa16.44■□□□□ 0.22
TMEM260-203ENST00000539559 PSMB11A5LHX3 300 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 TSPOP30536 169 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 C2orf83Q53S99 150 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 MRPL20Q9BYC9 149 aaKnown RBP16.43■□□□□ 0.22
TMEM260-203ENST00000539559 PLSCR4Q9NRQ2 329 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 KLF3P57682 345 aaPredicted RBP16.43■□□□□ 0.22
TMEM260-203ENST00000539559 PATE2Q6UY27 113 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 RPRMLQ8N4K4 120 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 FNDC4Q9H6D8 234 aaPredicted RBP16.43■□□□□ 0.22
TMEM260-203ENST00000539559 DKK4Q9UBT3 224 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 KALRNO60229 2985 aa16.43■□□□□ 0.22
TMEM260-203ENST00000539559 FAM181BA6NEQ2 426 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 HIGD1CA8MV81 97 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 H3BTX0 84 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 REG1AP05451 166 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 SELENOVP59797 346 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 POU2AF1Q16633 256 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 RTL8BQ17RB0 113 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 BLNKQ8WV28 456 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 NPIPB3Q92617 1050 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 GAFA1Q96PS6 74 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 PPP1R14DQ9NXH3 145 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 ZNF257Q9Y2Q1 563 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 GVINP1Q7Z2Y8 2422 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 FNDC10F2Z333 226 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 COX7A2P2O60397 106 aa16.42■□□□□ 0.22
TMEM260-203ENST00000539559 PRB4P10163 310 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms