RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SAA1P0DJI8 122 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 IGLL1P15814 213 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 CD69Q07108 199 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 LHFPL4Q7Z7J7 247 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 C1orf210Q8IVY1 113 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 MRPL27Q9P0M9 148 aaKnown RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 ARFGEF3Q5TH69 2177 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 ABCA1O95477 2261 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 CORTO00230 105 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 SLC25A5P05141 298 aaKnown RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 GRAMD2BQ96HH9 432 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 HARBI1Q96MB7 349 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 TNFRSF19Q9NS68 423 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 KLF3P57682 345 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 PEAR1Q5VY43 1037 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 MBNL2Q5VZF2 373 aaKnown RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 TCF24Q7RTU0 167 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 NPIPB3Q92617 1050 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 PROCRQ9UNN8 238 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 COX11Q9Y6N1 276 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 REG1AP05451 166 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 RNASE2P10153 161 aaKnown RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 HIST1H1EP10412 219 aaKnown RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 ORM2P19652 201 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 CD24P25063 80 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 ZNF137PP52743 207 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 GDF5OSQ5U4N7 250 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 SLC25A2Q9BXI2 301 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 YLPM1P49750 1951 aaKnown RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 CEP250Q9BV73 2442 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 FNDC10F2Z333 226 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 UBE2V1Q13404 147 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 C2orf83Q53S99 150 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 BHLHA15Q7RTS1 189 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 FAM216BQ8N7L0 139 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 MRPL32Q9BYC8 188 aaKnown RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 MRPS16Q9Y3D3 137 aaKnown RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 APOA2P02652 100 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 CT45A6P0DMU7 189 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 CT45A5P0DMU8 189 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 CT45A7P0DMV0 189 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 BPIFB3P59826 476 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 SSBP2P81877 361 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-237ENST00000539504 KIR3DL3Q8N743 410 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 TP73-AS1Q9UF72 201 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 ZNF257Q9Y2Q1 563 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 WASHC3Q9Y3C0 194 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 WDFY4Q6ZS81 3184 aa9.16□□□□□ -0.94
SYNE1-237ENST00000539504 OR4C46A6NHA9 309 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 H3BTX0 84 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 DLL1O00548 723 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 C22orf15Q8WYQ4 148 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 ALKBH7Q9BT30 221 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-237ENST00000539504 CHRDL1Q9BU40 450 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 TMEM70Q9BUB7 260 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 RNF24Q9Y225 148 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 IGHV2-26A0A0B4J1V2 119 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 TNFSF4P23510 183 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 OR1L4Q8NGR5 311 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 OR1L8Q8NGR8 309 aa9.15□□□□□ -0.94
SYNE1-237ENST00000539504 INTS1Q8N201 2190 aaKnown RBP9.15□□□□□ -0.94
SYNE1-237ENST00000539504 PGPA6NDG6 321 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 NKX6-3A6NJ46 265 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 HSBP1L1C9JCN9 74 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 FBLN7Q53RD9 439 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 C10orf55Q5SWW7 151 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 PDPNQ86YL7 162 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF596Q8TC21 504 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 DAZAP1Q96EP5 407 aaKnown RBP9.15□□□□□ -0.95
SYNE1-237ENST00000539504 FAM167A-AS1Q96KT0 104 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 SSUH2Q9Y2M2 353 aa9.15□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF329Q86UD4 541 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 C1orf162Q8NEQ5 155 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-237ENST00000539504 SARAFQ96BY9 339 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 PGLYRP4Q96LB8 373 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 RNF7Q9UBF6 113 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 PCNX2A6NKB5 2137 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 PLCE1Q9P212 2302 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 CA7P43166 264 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 CR1LQ2VPA4 569 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 OR1B1Q8NGR6 318 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 MRPL20Q9BYC9 149 aaKnown RBP9.14□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF430Q9H8G1 570 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-237ENST00000539504 DSPP15924 2871 aaKnown RBP9.14□□□□□ -0.95
SYNE1-237ENST00000539504 TOX4O94842 621 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 TNFAIP6P98066 277 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-237ENST00000539504 LINC00305Q7Z4B0 112 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 OR8B3Q8NGG8 313 aa9.14□□□□□ -0.95
SYNE1-237ENST00000539504 TPRP12270 2363 aaKnown RBP9.13□□□□□ -0.95
SYNE1-237ENST00000539504 hDV102S1A0JD36 115 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CBY3A6NI87 242 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 MOSP00540 346 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 POU2AF1Q16633 256 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 MPV17L2Q567V2 206 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 ETFRF1Q6IPR1 90 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 MCRIP2Q9BUT9 160 aaKnown RBP9.13□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF835Q9Y2P0 537 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 IGHV3-21A0A0B4J1V1 117 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms