RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GNB4Q9HAV0 340 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 NAT8BQ9UHF3 227 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 CUL9Q8IWT3 2517 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 NAV3Q8IVL0 2385 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 DLL1O00548 723 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 REG1BP48304 166 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 TCL1AP56279 114 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 SLC35B1P78383 322 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 SSBP2P81877 361 aaPredicted RBP15.6■□□□□ 0.09
VPS28-213ENST00000530983 NUP37Q8NFH4 326 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 MRPL32Q9BYC8 188 aaKnown RBP15.6■□□□□ 0.09
VPS28-213ENST00000530983 NKX6-3A6NJ46 265 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 MT-ND6P03923 174 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 TMEM177Q53S58 311 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 IBA57Q5T440 356 aaKnown RBP15.6■□□□□ 0.09
VPS28-213ENST00000530983 ZCCHC24Q8N2G6 241 aaKnown RBP15.6■□□□□ 0.09
VPS28-213ENST00000530983 FBXL7Q9UJT9 491 aa15.6■□□□□ 0.09
VPS28-213ENST00000530983 MEF2CQ06413 473 aaPredicted RBP15.59■□□□□ 0.09
VPS28-213ENST00000530983 WDR73Q6P4I2 378 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 Q8N976 141 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 ZNF714Q96N38 554 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 SAMD10Q9BYL1 202 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 CGB1A6NKQ9 187 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 INS-IGF2F8WCM5 200 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 K7EM74 188 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 UBE2L3P68036 154 aaKnown RBP15.59■□□□□ 0.09
VPS28-213ENST00000530983 ERHP84090 104 aaKnown RBP15.59■□□□□ 0.09
VPS28-213ENST00000530983 COL5A1-AS1Q5SY13 56 aa15.59■□□□□ 0.09
VPS28-213ENST00000530983 SMIM27A0A1W2PRY6 76 aa15.58■□□□□ 0.08
VPS28-213ENST00000530983 SIAH2O43255 324 aa15.58■□□□□ 0.08
VPS28-213ENST00000530983 MGST1P10620 155 aaKnown RBP15.58■□□□□ 0.08
VPS28-213ENST00000530983 WT1-ASQ06250 92 aa15.58■□□□□ 0.08
VPS28-213ENST00000530983 FLYWCH2Q96CP2 140 aaKnown RBP15.58■□□□□ 0.08
VPS28-213ENST00000530983 FNDC4Q9H6D8 234 aaPredicted RBP15.58■□□□□ 0.08
VPS28-213ENST00000530983 DNAJC4Q9NNZ3 241 aa15.58■□□□□ 0.08
VPS28-213ENST00000530983 ZFP30Q9Y2G7 519 aa15.58■□□□□ 0.08
VPS28-213ENST00000530983 TNFRSF1AP19438 455 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 RPL19P84098 196 aaKnown RBP15.57■□□□□ 0.08
VPS28-213ENST00000530983 DIAPH2-AS1Q14236 149 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 KIAA1644Q3SXP7 199 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 TMEM200BQ69YZ2 307 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 LINC00479Q96M42 142 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 PPIAL4AQ9Y536 164 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 CEP250Q9BV73 2442 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 USF1P22415 310 aaPredicted RBP15.57■□□□□ 0.08
VPS28-213ENST00000530983 C10orf55Q5SWW7 151 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 C11orf42Q8N5U0 333 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 RBMXL3Q8N7X1 1067 aaKnown RBP15.57■□□□□ 0.08
VPS28-213ENST00000530983 NHLRC2Q8NBF2 726 aa15.57■□□□□ 0.08
VPS28-213ENST00000530983 FAM103A1Q9BTL3 118 aaKnown RBP15.57■□□□□ 0.08
VPS28-213ENST00000530983 C17orf100A8MU93 164 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 TCF21O43680 179 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 GPX1P07203 203 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 PYYP10082 97 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 MMDQ15546 238 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 ADIPOQQ15848 244 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 MRPL54Q6P161 138 aaKnown RBP15.56■□□□□ 0.08
VPS28-213ENST00000530983 TMEM108Q6UXF1 575 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 TMEM167AQ8TBQ9 72 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 RNF2Q99496 336 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 CDC42EP3Q9UKI2 254 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 ROS1P08922 2347 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 CA1P00915 261 aaPredicted RBP15.56■□□□□ 0.08
VPS28-213ENST00000530983 CTRLP40313 264 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 KRTDAPP60985 99 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 OR10J3Q5JRS4 329 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 ASPHD1Q5U4P2 390 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 OR4C13Q8NGP0 309 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 FAM57AQ8TBR7 257 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 RCHY1Q96PM5 261 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 ZNF355PQ9NSJ1 428 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 SERTAD4Q9NUC0 356 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 BSNQ9UPA5 3926 aa15.56■□□□□ 0.08
VPS28-213ENST00000530983 AMY1AP04745 511 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 COX19Q49B96 90 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 PATE2Q6UY27 113 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 SIGLECL1Q8N7X8 197 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 FAM168AQ92567 244 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 IGKV1D-37A0A075B6S9 117 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 A0A1W2PN81 502 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 BMPR1BO00238 502 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 IGHV3-48P01763 117 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 OR4B1Q8NGF8 309 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 NPIPB3Q92617 1050 aa15.55■□□□□ 0.08
VPS28-213ENST00000530983 DIRC3C9JPN6 131 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 COX7A2P2O60397 106 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 IGLV2-23P01705 113 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 OR10X1Q8NGY0 326 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 ZNF430Q9H8G1 570 aaPredicted RBP15.54■□□□□ 0.08
VPS28-213ENST00000530983 AMMECR1Q9Y4X0 333 aaPredicted RBP15.54■□□□□ 0.08
VPS28-213ENST00000530983 ZNF318Q5VUA4 2279 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 DPRXA6NFQ7 191 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 FSTL3O95633 263 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 HLA-DQA1P01909 254 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 C10orf113Q5VZT2 155 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 PDPNQ86YL7 162 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 STPG4Q8N801 248 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 OR4A5Q8NH83 315 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 VSTM2AQ8TAG5 236 aa15.54■□□□□ 0.08
VPS28-213ENST00000530983 MRPL36Q9P0J6 103 aaKnown RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms