RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CCDC42Q96M95 316 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 OR51I1Q9H343 314 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 ATPIF1Q9UII2 106 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 KLK5Q9Y337 293 aaPredicted RBP2.08□□□□□ -2.08
CD44-223ENST00000526553 MYLKQ15746 1914 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 MYH11P35749 1972 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 APC2O95996 2303 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 ASH1LQ9NR48 2969 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 NUP210Q8TEM1 1887 aaPredicted RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 DOPEY2Q9Y3R5 2298 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 PTPRDP23468 1912 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 KNL1Q8NG31 2342 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 WDFY3Q8IZQ1 3526 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 LAMA5O15230 3695 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 IGHV3-73A0A0B4J1V6 119 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 IGHV1-69-2A0A0G2JMI3 117 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 SPAARA0A1B0GVQ0 90 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 A0A1W2PNM2 257 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 LY6HO94772 140 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 REG1AP05451 166 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 OR5G3P0C626 314 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 CRHBPP24387 322 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 ALDH3A1P30838 453 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 S100A5P33763 92 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 KRR1Q13601 381 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 LRRC75BQ2VPJ9 315 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 Q6ZS52 159 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 OR10D4PQ8NGN7 298 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 OR4K13Q8NH42 304 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 LMX1AQ8TE12 382 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 C12orf43Q96C57 262 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 CAPZA3Q96KX2 299 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 CCL13Q99616 98 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 Q9H521 79 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 LRRC19Q9H756 370 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 XPNPEP1Q9NQW7 623 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 SLC2A9Q9NRM0 540 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 TXNL4BQ9NX01 149 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 AK3Q9UIJ7 227 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 PRELID1Q9Y255 219 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 KIAA1549LQ6ZVL6 1849 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 TNRC6BQ9UPQ9 1833 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 PIEZO2Q9H5I5 2752 aa2.07□□□□□ -2.08
CD44-223ENST00000526553 HELZP42694 1942 aaKnown RBP2.07□□□□□ -2.08
CD44-223ENST00000526553 SMG1Q96Q15 3661 aaKnown RBP2.06□□□□□ -2.08
CD44-223ENST00000526553 ITPR1Q14643 2758 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 COL6A6A6NMZ7 2263 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 COL4A2P08572 1712 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 ZNF462Q96JM2 2506 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 IGLV10-54A0A075B6I4 117 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TMED7-TICAM2A0A0A6YYA0 188 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 ARL5CA6NH57 179 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TMEM210A6NLX4 147 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 OR4C45A6NMZ5 311 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 C17orf98A8MV24 154 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 UBE2L6O14933 153 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TBPL1P62380 186 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 AKIRIN2Q53H80 203 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 C1orf194Q5T5A4 169 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 SFXN4Q6P4A7 337 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 ZNF322Q6U7Q0 402 aaPredicted RBP2.06□□□□□ -2.08
CD44-223ENST00000526553 STX12Q86Y82 276 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TRAPPC5Q8IUR0 188 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 IFT20Q8IY31 132 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 C1orf158Q8N1D5 194 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 DEFB125Q8N687 156 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 OR2T27Q8NH04 317 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TCEAL4Q96EI5 215 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 CGREF1Q99674 301 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 SELENOSQ9BQE4 189 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 TMEM222Q9H0R3 208 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 OR51V1Q9H2C8 321 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 RPL26L1Q9UNX3 145 aaKnown RBP2.06□□□□□ -2.08
CD44-223ENST00000526553 SLC22A13Q9Y226 551 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 LOC400499M0QZD8 3231 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 CACNA1DQ01668 2161 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 SPTA1P02549 2419 aa2.06□□□□□ -2.08
CD44-223ENST00000526553 USP9XQ93008 2570 aaPredicted RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 HECTD1Q9ULT8 2610 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 OBSL1O75147 1896 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 ANAPC1Q9H1A4 1944 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 PTPRQQ9UMZ3 2332 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 EVPLLA8MZ36 301 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 E7EQL1 145 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 J3QKU1 62 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 ZNF189O75820 626 aaPredicted RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 TNNC2P02585 160 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 CTSGP08311 255 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 RPS17P08708 135 aaKnown RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 RPSAP08865 295 aaKnown RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 FAM228BP0C875 321 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 CCL3P10147 92 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 CSRP1P21291 193 aaKnown RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 CRYBB3P26998 211 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 CD200P41217 278 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 IDH3GP51553 393 aaPredicted RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 CAV1Q03135 178 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 FABP9Q0Z7S8 132 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 PRDX4Q13162 271 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms