RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OR5AU1Q8NGC0 362 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 CMTM2Q8TAZ6 248 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 TNFRSF14Q92956 283 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 IGHV1-69-2A0A0G2JMI3 117 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 SLC25A17O43808 307 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 MT-ND6P03923 174 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 PAFAH1B2P68402 229 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 CX3CL1P78423 397 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 RBPJQ06330 500 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 ETFRF1Q6IPR1 90 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 WDR73Q6P4I2 378 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 OR8I2Q8N0Y5 310 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 TMEM133Q9H2Q1 129 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 CDC42EP3Q9UKI2 254 aa17.13■□□□□ 0.33
VPS28-205ENST00000526204 ESDP10768 282 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 IER3P46695 156 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 MORN5Q5VZ52 161 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 DMRTC2Q8IXT2 367 aaPredicted RBP17.12■□□□□ 0.33
VPS28-205ENST00000526204 IGF2BP2-AS1Q96M15 143 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 ZNF355PQ9NSJ1 428 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 TRAV5A0A0B4J249 113 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 IGLV2-8P01709 118 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 APOBEC3AP31941 199 aaPredicted RBP17.12■□□□□ 0.33
VPS28-205ENST00000526204 TEX45Q8NA69 505 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 MS4A10Q96PG2 267 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 PAXXQ9BUH6 204 aa17.12■□□□□ 0.33
VPS28-205ENST00000526204 RNASE7Q9H1E1 156 aaKnown RBP17.12■□□□□ 0.33
VPS28-205ENST00000526204 GRIFINA4D1Z8 144 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 NUPR1O60356 82 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 RANP62826 216 aaKnown RBP17.11■□□□□ 0.33
VPS28-205ENST00000526204 SSBP2P81877 361 aaPredicted RBP17.11■□□□□ 0.33
VPS28-205ENST00000526204 MGAQ8IWI9 3026 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 IGKV1D-37A0A075B6S9 117 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 A0A1B0GUS0 222 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 SNURFLB1AK76 121 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 B9A039 149 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 TPPP2P59282 170 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 RAB4BP61018 213 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 IBA57Q5T440 356 aaKnown RBP17.11■□□□□ 0.33
VPS28-205ENST00000526204 C11orf42Q8N5U0 333 aa17.11■□□□□ 0.33
VPS28-205ENST00000526204 A0A1W2PPI3 338 aa17.1■□□□□ 0.33
VPS28-205ENST00000526204 ENSAO43768 121 aaKnown RBP17.1■□□□□ 0.33
VPS28-205ENST00000526204 SCGB1D1O95968 90 aa17.1■□□□□ 0.33
VPS28-205ENST00000526204 Q0VG73 95 aa17.1■□□□□ 0.33
VPS28-205ENST00000526204 TBR1Q16650 682 aa17.1■□□□□ 0.33
VPS28-205ENST00000526204 AMMECR1Q9Y4X0 333 aaPredicted RBP17.1■□□□□ 0.33
VPS28-205ENST00000526204 PVRIGQ6DKI7 326 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 PATE2Q6UY27 113 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 LINC00469Q8N7U9 141 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 BEND2Q8NDZ0 799 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 STXBP6Q8NFX7 210 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 MGST1P10620 155 aaKnown RBP17.09■□□□□ 0.33
VPS28-205ENST00000526204 PRRX1P54821 245 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 MRGPRG-AS1Q2M3A8 158 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 LBHQ53QV2 105 aaPredicted RBP17.09■□□□□ 0.33
VPS28-205ENST00000526204 ST6GALNAC3Q8NDV1 305 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 RALYQ9UKM9 306 aaKnown RBP17.09■□□□□ 0.33
VPS28-205ENST00000526204 TP53TG3Q9ULZ0 132 aa17.09■□□□□ 0.33
VPS28-205ENST00000526204 SMIM27A0A1W2PRY6 76 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 CD3EP07766 207 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 UNQ6494/PRO21346Q6UXR6 183 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 SPACA3Q8IXA5 215 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 RITA1Q96K30 269 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 VKORC1Q9BQB6 163 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 NDUFAF3Q9BU61 184 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 TPSG1Q9NRR2 321 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 NAGKQ9UJ70 344 aa17.08■□□□□ 0.33
VPS28-205ENST00000526204 SPTBN2O15020 2390 aa17.08■□□□□ 0.32
VPS28-205ENST00000526204 IGLC7A0M8Q6 106 aa17.08■□□□□ 0.32
VPS28-205ENST00000526204 CRYGCP07315 174 aa17.08■□□□□ 0.32
VPS28-205ENST00000526204 FXYD3Q14802 87 aa17.08■□□□□ 0.32
VPS28-205ENST00000526204 C22orf15Q8WYQ4 148 aa17.08■□□□□ 0.32
VPS28-205ENST00000526204 FSTL3O95633 263 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 PYYP10082 97 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 ZNF329Q86UD4 541 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 BAGE3Q86Y29 109 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 BAGE2Q86Y30 109 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 NAT8BQ9UHF3 227 aa17.07■□□□□ 0.32
VPS28-205ENST00000526204 RPL27AP46776 148 aaKnown RBP17.06■□□□□ 0.32
VPS28-205ENST00000526204 CASP6P55212 293 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 PRR30Q53SZ7 412 aaPredicted RBP17.06■□□□□ 0.32
VPS28-205ENST00000526204 LINC00305Q7Z4B0 112 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 TRGV9Q99603 122 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 TNFRSF19Q9NS68 423 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 IGHV2-26A0A0B4J1V2 119 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 PEX7O00628 323 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 SERF1AO75920 110 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 IGHV3-48P01763 117 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 REG1AP05451 166 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 FXYD5Q96DB9 178 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 PERPQ96FX8 193 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 SERTAD4Q9NUC0 356 aa17.06■□□□□ 0.32
VPS28-205ENST00000526204 MRPL36Q9P0J6 103 aaKnown RBP17.06■□□□□ 0.32
VPS28-205ENST00000526204 IGHV3-72A0A0B4J1Y9 119 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 CORTO00230 105 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 IGLV1-47P01700 117 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 FRMD6-AS1P0C7T7 363 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 LINC00310P59036 64 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 TMEM136Q6ZRR5 245 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 FAM231DQ6ZW35 169 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms