RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 TRAV1-1A0A0B4J248 108 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TRAV41A0A0B4J266 112 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 A0A1B0GV50 99 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 LOC107986453A0A1B0GWG9 222 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C5orf49A4QMS7 147 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 IZUMO1RA6ND01 250 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 A6NDN8 102 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNF860A6NHJ4 632 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNF727A8MUV8 499 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C4orf51C9J302 202 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 MCRIP1C9JLW8 97 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ISLRO14498 428 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 XKRYO14609 159 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 FFAR1O14842 300 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PLA2G10O15496 165 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SOCS1O15524 211 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNF253O75346 499 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PITX3O75364 302 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 NDUFB6O95139 128 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TNFP01375 233 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TRGC2P03986 189 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CD55P08174 381 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 FCGR3AP08637 254 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CXCL1P09341 107 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CECR9P0C854 216 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 P0DMU3 169 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 FAM231AP0DMU4 169 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 FAM231CP0DMU5 169 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SMIM10L2AP0DMW4 78 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SMIM10L2BP0DMW5 78 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CRISP2P16562 243 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 RPS4Y1P22090 263 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 PSMB8P28062 276 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PSMB9P28065 219 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 RBMXP38159 391 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 SLC25A1P53007 311 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 MTPNP58546 118 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 RPS11P62280 158 aaKnown RBP eCLIP1.69□□□□□ -2.14
CD44-216ENST00000525293 LSM3P62310 102 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 IGLV3-21P80748 117 aaPredicted RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 PLGLB1Q02325 96 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 MSMO1Q15800 293 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ABCA11PQ4W5N1 156 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C9orf153Q5TBE3 101 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C1orf189Q5VU69 101 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNF880Q6PDB4 577 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SLC25A34Q6PIV7 304 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SLC25A26Q70HW3 274 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 VN1R4Q7Z5H5 301 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PRNTQ86SH4 94 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 WDR86Q86TI4 376 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C6orf223Q8N319 242 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C10orf111Q8N326 155 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 C10orf126Q8N4M7 172 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 RPP25LQ8N5L8 163 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 TMEM75Q8N9X5 138 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNRF1Q8ND25 227 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 OR8S1Q8NH09 359 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 OR9G1Q8NH87 305 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 OTOSQ8NHW6 89 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 FGF14Q92915 247 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TM2D3Q9BRN9 247 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TMEM70Q9BUB7 260 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PAXXQ9BUH6 204 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TMEM191AQ9H0A3 160 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 LIME1Q9H400 295 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 RERGLQ9H628 205 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ANAPC11Q9NYG5 84 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CCDC167Q9P0B6 97 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TP73-AS1Q9UF72 201 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 CACFD1Q9UGQ2 172 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 TRMT112Q9UI30 125 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 AK3Q9UIJ7 227 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ANAPC10Q9UM13 185 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZC3H13Q5T200 1668 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 EPRSP07814 1512 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 UBR4Q5T4S7 5183 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 ZNF106Q9H2Y7 1883 aaKnown RBP1.69□□□□□ -2.14
CD44-216ENST00000525293 A2ML1A8K2U0 1454 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 PLEKHH2Q8IVE3 1493 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 SIGLEC1Q9BZZ2 1709 aa1.69□□□□□ -2.14
CD44-216ENST00000525293 KIF13BQ9NQT8 1826 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 ATG2AQ2TAZ0 1938 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 KIF1AQ12756 1690 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RIC1Q4ADV7 1423 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CASKIN1Q8WXD9 1431 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CASZ1Q86V15 1759 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 DUOX2Q9NRD8 1548 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TRBV19A0A075B6N1 114 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TRAV27A0A087WT01 109 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SMIM26A0A096LP01 95 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 IGKV1D-43A0A0B4J1Z2 117 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 A0A0G2JRQ6 117 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TCRBV3S1A0A5B6 114 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 C7orf66A4D0T2 115 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 ARRDC5A6NEK1 342 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 C11orf98E9PRG8 122 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 M0R1X1 148 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 LGALS9O00182 355 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 NDUFS5O43920 106 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms