RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ZNF502Q8TBZ5 544 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 EEF1AKMT3Q96AZ1 226 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 CCDC140Q96MF4 163 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 ZNF747Q9BV97 191 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 C21orf62Q9NYP8 219 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 F8W735 103 aaPredicted RBP12.58□□□□□ -0.4
LSM1-204ENST00000522515 RPL12P30050 165 aaKnown RBP12.58□□□□□ -0.4
LSM1-204ENST00000522515 SULT1A1P50225 295 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 ZNF343Q6P1L6 599 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 SLC16A13Q7RTY0 426 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 ZNF546Q86UE3 836 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 STX12Q86Y82 276 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 TMEM217Q8N7C4 229 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 KLHL30-AS1Q8NEE0 82 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 OR11H4Q8NGC9 324 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 OR10P1Q8NGE3 313 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 SLC25A31Q9H0C2 315 aa12.58□□□□□ -0.4
LSM1-204ENST00000522515 TRBV7-1A0A0A6YYK4 115 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 RPS10-NUDT3A0A1W2PQS6 291 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 I3L521 148 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 LGALS1P09382 135 aaKnown RBP12.57□□□□□ -0.4
LSM1-204ENST00000522515 GPX4P36969 197 aaPredicted RBP12.57□□□□□ -0.4
LSM1-204ENST00000522515 NSUN5P1Q3KNT7 163 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 ACSM6Q6P461 480 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 ACOT7LQ6ZUV0 252 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 UBAC2Q8NBM4 344 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 C4orf3Q8WVX3 66 aa12.57□□□□□ -0.4
LSM1-204ENST00000522515 BSCL2Q96G97 398 aaPredicted RBP12.57□□□□□ -0.4
LSM1-204ENST00000522515 ANKRD34BA5PLL1 514 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 NUDT19A8MXV4 375 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 TRBV12-3P01733 135 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 MFAP4P55083 255 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 GAMTQ14353 236 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 ETFRF1Q6IPR1 90 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 CLEC19AQ6UXS0 136 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 C8orf86Q6ZUL3 223 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 NDUFA11Q86Y39 141 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 CACNG8Q8WXS5 425 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 TNFSF18Q9UNG2 199 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.56□□□□□ -0.4
LSM1-204ENST00000522515 CLEC3BP05452 202 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 GPR183P32249 361 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 RND2P52198 227 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 SLC38A11Q08AI6 406 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 DEFB136Q30KP8 78 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 Q56UQ5 140 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 ACY3Q96HD9 319 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 AQP10Q96PS8 301 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 HSPB11Q9Y547 144 aa12.56□□□□□ -0.4
LSM1-204ENST00000522515 RNF222A6NCQ9 220 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 OR2T8A6NH00 312 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 ARPC5O15511 151 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 S100A11P31949 105 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 FCGR2BP31994 310 aaPredicted RBP12.55□□□□□ -0.4
LSM1-204ENST00000522515 DLK1P80370 383 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 RUNX1Q01196 453 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 BAXQ07812 192 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 TMEM116Q8NCL8 245 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 OR5C1Q8NGR4 320 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 OR4X1Q8NH49 305 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 NPIPB3Q92617 1050 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 SLC35E1Q96K37 410 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 TXN2Q99757 166 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 ZC4H2Q9NQZ6 224 aa12.55□□□□□ -0.4
LSM1-204ENST00000522515 PEF1Q9UBV8 284 aaKnown RBP12.55□□□□□ -0.4
LSM1-204ENST00000522515 STAB1Q9NY15 2570 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 PPP5D1E7EU14 171 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 SCAF4O95104 1147 aaKnown RBP12.54□□□□□ -0.4
LSM1-204ENST00000522515 C1QBP02746 253 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 NUP62P37198 522 aaPredicted RBP12.54□□□□□ -0.4
LSM1-204ENST00000522515 NPBWR1P48145 328 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 HBG1P69891 147 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 HBG2P69892 147 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 SHISA2Q6UWI4 295 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 INO80EQ8NBZ0 244 aaPredicted RBP12.54□□□□□ -0.4
LSM1-204ENST00000522515 DUX3Q96PT4 197 aa12.54□□□□□ -0.4
LSM1-204ENST00000522515 IGHV4OR15-8A0A075B7B6 117 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 A0A087WW49 117 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 SMCO3A2RU48 225 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 GNG7O60262 68 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 CLN5O75503 358 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 CTSGP08311 255 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 KRTAP21-3Q3LHN1 58 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 LILRB2Q8N423 598 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 OR11H1Q8NG94 326 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 OR1S2Q8NGQ3 325 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 ATP6V0BQ99437 205 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 CHRDL1Q9BU40 450 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 GGACTQ9BVM4 153 aa12.53□□□□□ -0.4
LSM1-204ENST00000522515 HMSDA8MTL9 139 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 BMPR1BO00238 502 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 TGOLN2O43493 480 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 HSPB1P04792 205 aaKnown RBP12.52□□□□□ -0.4
LSM1-204ENST00000522515 ADMP35318 185 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 ARL3P36405 182 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 AP2S1P53680 142 aaPredicted RBP12.52□□□□□ -0.4
LSM1-204ENST00000522515 AKR1C1Q04828 323 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 CLINT1Q14677 625 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 RAX2Q96IS3 184 aa12.52□□□□□ -0.4
LSM1-204ENST00000522515 SMIM3Q9BZL3 60 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms