RNA–Protein interactions for RNA: ENST00000513678.5

MATR3-222, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 444 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-222	ENST00000513678	SCGB3A2	Q96PL1	93 aa		12.49	□□□□□ -0.41
MATR3-222	ENST00000513678	RHPN1-AS1	Q9BWJ2	59 aa		12.49	□□□□□ -0.41
MATR3-222	ENST00000513678	SCP2D1	Q9UJQ7	156 aa		12.49	□□□□□ -0.41
MATR3-222	ENST00000513678	FABP12	A6NFH5	140 aa		12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	HOXA1	P49639	335 aa	Predicted RBP	12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	TMEM116	Q8NCL8	245 aa		12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	MCFD2	Q8NI22	146 aa		12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	RNASE11	Q8TAA1	199 aa	Known RBP	12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	GINS3	Q9BRX5	216 aa		12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	ENY2	Q9NPA8	101 aa		12.48	□□□□□ -0.41
MATR3-222	ENST00000513678	IGHV3OR16-8	A0A075B7F1	116 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	TRAV14DV4	A0A0A6YYC5	116 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	ZNF207	O43670	478 aa	Known RBP	12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	YIF1A	O95070	293 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	TMEM50A	O95807	157 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	IGHV3-48	P01763	117 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	BMI1	P35226	326 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	HTR2B	P41595	481 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	FAM90A2P	Q658T7	463 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	TOMM20L	Q6UXN7	152 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	ZNF600	Q6ZNG1	722 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	OR4X1	Q8NH49	305 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	RNF2	Q99496	336 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	VSIR	Q9H7M9	311 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	KCNIP3	Q9Y2W7	256 aa		12.47	□□□□□ -0.41
MATR3-222	ENST00000513678	KIR2DL5B	A0A0G2JN68	375 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	KIR2DL5B	A0A0G2JPC4	375 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	UBE2C	O00762	179 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	CMC4	P56277	68 aa	Predicted RBP	12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	TMEM187	Q14656	261 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	TMEM268	Q5VZI3	342 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678		Q6ZWC4	215 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	WFDC3	Q8IUB2	231 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	KIR2DL5A	Q8N109	375 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	KIR2DL5B	Q8NHK3	375 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	DEDD2	Q8WXF8	326 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	TMEM230	Q96A57	120 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	GPR146	Q96CH1	333 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	FNDC4	Q9H6D8	234 aa	Predicted RBP	12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	ZFAND3	Q9H8U3	227 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	CACNG5	Q9UF02	275 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	UBQLN2	Q9UHD9	624 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	TP53TG1	Q9Y2A0	90 aa		12.46	□□□□□ -0.41
MATR3-222	ENST00000513678	CLN5	O75503	358 aa		12.45	□□□□□ -0.42
MATR3-222	ENST00000513678	JTB	O76095	146 aa		12.45	□□□□□ -0.42
MATR3-222	ENST00000513678	APOC4	P55056	127 aa		12.45	□□□□□ -0.42
MATR3-222	ENST00000513678	C2orf83	Q53S99	150 aa		12.45	□□□□□ -0.42
MATR3-222	ENST00000513678	TRIM63	Q969Q1	353 aa		12.45	□□□□□ -0.42
MATR3-222	ENST00000513678		A0A0B4J2A0	478 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	PIGBOS1	A0A0B4J2F0	54 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	SCGB2A1	O75556	95 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	FAU	P35544	74 aa	Known RBP	12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	KLF9	Q13886	244 aa	Predicted RBP	12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	NMS	Q5H8A3	153 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	RNASEH2C	Q8TDP1	164 aa	Known RBP	12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	SHPK	Q9UHJ6	478 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	PUS1	Q9Y606	427 aa	Known RBP eCLIP	12.44	□□□□□ -0.42
MATR3-222	ENST00000513678		V9GYH0	126 aa		12.44	□□□□□ -0.42
MATR3-222	ENST00000513678	TRAV30	A0A087WSZ9	112 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	TRAV2	A0A0B4J234	112 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	RPS10-NUDT3	A0A1W2PQS6	291 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	ZNF701	M0R085	212 aa	Predicted RBP	12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	OPRK1	P41145	380 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	AP3S2	P59780	193 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	SUPT4H1	P63272	117 aa	Known RBP	12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	SRPX	P78539	464 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	RBM38	Q9H0Z9	239 aa	Known RBP	12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	HEYL	Q9NQ87	328 aa	Predicted RBP	12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	MCUB	Q9NWR8	336 aa		12.43	□□□□□ -0.42
MATR3-222	ENST00000513678	MRPL36	Q9P0J6	103 aa	Known RBP	12.43	□□□□□ -0.42
MATR3-222	ENST00000513678		A0A1B0GU03	582 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	IGKV1-17	P01599	117 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	SULT1A3	P0DMM9	295 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	SULT1A4	P0DMN0	295 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	SLC25A4	P12235	298 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	TNFRSF9	Q07011	255 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	DEFB135	Q30KP9	77 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	NOXA1	Q86UR1	476 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	SLC24A4	Q8NFF2	622 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	TMEM231	Q9H6L2	316 aa		12.42	□□□□□ -0.42
MATR3-222	ENST00000513678	SPRY2	O43597	315 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	ANXA3	P12429	323 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	CRYBB3	P26998	211 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	CCR6	P51684	374 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	PAFAH1B2	P68402	229 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	EWSR1	Q01844	656 aa	Known RBP eCLIP	12.41	□□□□□ -0.42	5e-9	■■■□□ 16
MATR3-222	ENST00000513678	ZNF79	Q15937	498 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	MLANA	Q16655	118 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	TCF24	Q7RTU0	167 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	CCDC190	Q86UF4	302 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	TMEM170A	Q8WVE7	144 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	ST8SIA2	Q92186	375 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	MAP6D1	Q9H9H5	199 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	HSPB7	Q9UBY9	170 aa		12.41	□□□□□ -0.42
MATR3-222	ENST00000513678	IGHV3-49	A0A0A0MS15	119 aa		12.4	□□□□□ -0.42
MATR3-222	ENST00000513678		A0A0J9YWU9	116 aa		12.4	□□□□□ -0.42
MATR3-222	ENST00000513678	DUXB	A0A1W2PPF3	345 aa		12.4	□□□□□ -0.42
MATR3-222	ENST00000513678		A0A1W2PS18	150 aa		12.4	□□□□□ -0.42
MATR3-222	ENST00000513678	CEBPZOS	A8MTT3	80 aa		12.4	□□□□□ -0.42
MATR3-222	ENST00000513678	DFFB	O76075	338 aa		12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms