RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 POU2AF1Q16633 256 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 SPATA45Q537H7 98 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 STUMQ69YW2 141 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 Q8N976 141 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 DEFB124Q8NES8 71 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 TMEM68Q96MH6 324 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 RNF2Q99496 336 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 TXN2Q99757 166 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 RAB9BQ9NP90 201 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 SMG1Q96Q15 3661 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ITGB1BP1O14713 200 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 C2orf83Q53S99 150 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 SLC25A48Q6ZT89 311 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 FAM167A-AS1Q96KT0 104 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 SSBP4Q9BWG4 385 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ZNF257Q9Y2Q1 563 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 OTOGLQ3ZCN5 2332 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 A0A1W2PRE2 83 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ZNF324O75467 553 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 GNG5P63218 68 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ERHP84090 104 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 TIMM23BQ5SRD1 257 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ZNF788Q6ZQV5 615 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 FNDC4Q9H6D8 234 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 LPAR2Q9HBW0 351 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 H3BTX0 84 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 COX7A2P2O60397 106 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 AMY1AP04745 511 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 MAJINQ3KP22 176 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 C1orf174Q8IYL3 243 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 PIEZO2Q9H5I5 2752 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 RPL8P62917 257 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 OR5B3Q8NH48 314 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 TSKUQ8WUA8 353 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 BLNKQ8WV28 456 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 KCNS1Q96KK3 526 aa7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 MRPL36Q9P0J6 103 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-215ENST00000512632 ADGRG4Q8IZF6 3080 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 IGHV3-21A0A0B4J1V1 117 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 DPRXA6NFQ7 191 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 HLA-DQA1P01909 254 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 NIT1Q86X76 327 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 H1FXQ92522 213 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 PAXXQ9BUH6 204 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 SLC25A2Q9BXI2 301 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 IGLV3-9A0A075B6K5 115 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 hADV38S2A0JD32 116 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 CORTO00230 105 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 Q6ZN92 141 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 OR1L8Q8NGR8 309 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 IGF2BP2-AS1Q96M15 143 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 PTPRZ1P23471 2315 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 IGHV3-72A0A0B4J1Y9 119 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 A0A1W2PN81 502 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 APOA2P02652 100 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 ORM2P19652 201 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 WT1-ASQ06250 92 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 TNXAQ16473 311 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 PATE2Q6UY27 113 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 OR4B1Q8NGF8 309 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 BORCS7Q96B45 105 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 IZUMO1RA6ND01 250 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 FNDC10F2Z333 226 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 HSBP1O75506 76 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 PRB3Q04118 309 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 OR10J3Q5JRS4 329 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 GDF5OSQ5U4N7 250 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 C19orf35Q6ZS72 473 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 SPACA3Q8IXA5 215 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 NUDT10Q8NFP7 164 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 FAM222BQ8WU58 562 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 FLYWCH2Q96CP2 140 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 NUDT11Q96G61 164 aa7.5□□□□□ -1.21
LIMCH1-215ENST00000512632 ZNF318Q5VUA4 2279 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 SMIM27A0A1W2PRY6 76 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 MBD3L4A6NDZ8 208 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 MBD3L3A6NE82 208 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 MBD3L5A6NJ08 208 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 PRB4P10163 310 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 PRRX1P54821 245 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 C10orf113Q5VZT2 155 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 HCP5Q6MZN7 132 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 MBD3L2Q8NHZ7 208 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 C18orf32Q8TCD1 76 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 CLEC7AQ9BXN2 247 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 BET1LQ9NYM9 111 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 FAM215AQ9Y5M1 114 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 DLL1O00548 723 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 CD24P25063 80 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 RBMXL3Q8N7X1 1067 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 NUP35Q8NFH5 326 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 NDUFA4L2Q9NRX3 87 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 MOSP00540 346 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 DMRTA1Q5VZB9 504 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 IGFL2Q6UWQ7 119 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 LOXL4Q96JB6 756 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 ARL2-SNX15V9GYD0 113 aa7.49□□□□□ -1.21
LIMCH1-215ENST00000512632 TANC2Q9HCD6 1990 aa7.48□□□□□ -1.21
LIMCH1-215ENST00000512632 TNFSF4P23510 183 aa7.48□□□□□ -1.21
LIMCH1-215ENST00000512632 Q56UQ5 140 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms