RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 HLA-GP17693 338 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 CBLN1P23435 193 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 F2RP25116 425 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 H2BFSP57053 126 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 TNP2Q05952 138 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 SP6Q3SY56 376 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 KCTD9Q7L273 389 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 TMED4Q7Z7H5 227 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 CMTM1Q8IZ96 169 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 KIR2DL5AQ8N109 375 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 KIR2DL5BQ8NHK3 375 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 ADTRPQ96IZ2 230 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 NAA60Q9H7X0 242 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 C14orf166Q9Y224 244 aaKnown RBP6.66□□□□□ -1.34
NUP54-211ENST00000512151 WASHC3Q9Y3C0 194 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 HMCN2Q8NDA2 5059 aa6.66□□□□□ -1.34
NUP54-211ENST00000512151 C3orf85A0A1B0GTC6 90 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 PPP5D1E7EU14 171 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 H7C2Y5 167 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 CRYZL1O95825 349 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 IGLV2-23P01705 113 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 MC5RP33032 325 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 LPAR6P43657 344 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 TAS2R31P59538 309 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 UBE2MP61081 183 aaKnown RBP6.65□□□□□ -1.35
NUP54-211ENST00000512151 PJVKQ0ZLH3 352 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 DHRS2Q13268 280 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 PPP1R1AQ13522 171 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 TMEM187Q14656 261 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 MRGPRG-AS1Q2M3A8 158 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 TEX261Q6UWH6 196 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 PDPNQ86YL7 162 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 SPAG16Q8N0X2 631 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 LHFPL5Q8TAF8 219 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 GLYATL2Q8WU03 294 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 USMG5Q96IX5 58 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 SCGB3A2Q96PL1 93 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 RARRES2Q99969 163 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 U3KQ87 197 aa6.65□□□□□ -1.35
NUP54-211ENST00000512151 VPS13BQ7Z7G8 4022 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.64□□□□□ -1.35
NUP54-211ENST00000512151 TEX13DA0A0J9YY54 714 aaPredicted RBP6.64□□□□□ -1.35
NUP54-211ENST00000512151 TMEM213A2RRL7 107 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 C9orf170A2RU37 121 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 C11orf94C9JXX5 98 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 OR2C1O95371 312 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 SIX6O95475 246 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 APOA2P02652 100 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 CRYGBP07316 175 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 OR5AC1P0C628 307 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 APELAP0DMC3 54 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 HTR2BP41595 481 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 CATR1Q13166 79 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 EXOSC2Q13868 293 aaKnown RBP6.64□□□□□ -1.35
NUP54-211ENST00000512151 ODF3L2Q3SX64 289 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 TMEM128Q5BJH2 165 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 CCDC71LQ8N9Z2 235 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 ZNF680Q8NEM1 530 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 MITD1Q8WV92 249 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 MAP6D1Q9H9H5 199 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 COA4Q9NYJ1 87 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 PRELID3BQ9Y3B1 194 aa6.64□□□□□ -1.35
NUP54-211ENST00000512151 AGRNO00468 2067 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 A0A0B4J2A0 478 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 EPM2AB3EWF7 344 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 L7N2F9 121 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 SHOXO15266 292 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 RBFOX2O43251 390 aaKnown RBP eCLIP6.63□□□□□ -1.35
NUP54-211ENST00000512151 TSC22D2O75157 780 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 SFT2D2O95562 160 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 MPC2O95563 127 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 HPRT1P00492 218 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 IFNA7P01567 189 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 PRH1P02810 166 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 IL6RP08887 468 aaPredicted RBP6.63□□□□□ -1.35
NUP54-211ENST00000512151 RRASP10301 218 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 RPA2P15927 270 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 CXCL2P19875 107 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 UCP1P25874 307 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 RPS16P62249 146 aaKnown RBP6.63□□□□□ -1.35
NUP54-211ENST00000512151 TAGLNQ01995 201 aaKnown RBP6.63□□□□□ -1.35
NUP54-211ENST00000512151 FGL1Q08830 312 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 OPCMLQ14982 345 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 ANKRD55Q3KP44 614 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 PVRIGQ6DKI7 326 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 BTNL8Q6UX41 500 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 Q6ZTC4 211 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 SELENOHQ8IZQ5 122 aaKnown RBP6.63□□□□□ -1.35
NUP54-211ENST00000512151 VKORC1L1Q8N0U8 176 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 OR11H2Q8NH07 326 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 OR4S2Q8NH73 311 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 GALNT14Q96FL9 552 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 CCDC140Q96MF4 163 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 PHB2Q99623 299 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 SCRT1Q9BWW7 348 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 FAM212BQ9NTI7 297 aaPredicted RBP6.63□□□□□ -1.35
NUP54-211ENST00000512151 SHPKQ9UHJ6 478 aa6.63□□□□□ -1.35
NUP54-211ENST00000512151 TRAV14DV4A0A0A6YYC5 116 aa6.62□□□□□ -1.35
NUP54-211ENST00000512151 TRAV3A0A0B4J244 114 aa6.62□□□□□ -1.35
NUP54-211ENST00000512151 A0A0G2JRQ6 117 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms