RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 TDRG1Q3Y452 100 aa7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 DOLPP1Q86YN1 238 aa7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 SAMD10Q9BYL1 202 aa7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 RNASE7Q9H1E1 156 aaKnown RBP7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 RNF114Q9Y508 228 aa7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 AHCTF1Q8WYP5 2266 aa7.47□□□□□ -1.21
PDGFRA-208ENST00000509490 FAM231BA6NCW3 169 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 PEX7O00628 323 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 OR7C2O60412 319 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 GOSR1O95249 250 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 APCSP02743 223 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 IRF2P14316 349 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 WT1P19544 449 aaPredicted RBP7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 HNF1AP20823 631 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 SUB1P53999 127 aaKnown RBP eCLIP7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 SUMO1P63165 101 aaKnown RBP7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 PMCHL1Q16048 86 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 Q6ZS92 163 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 OR4C13Q8NGP0 309 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 TSKUQ8WUA8 353 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 PLPPR2Q96GM1 343 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 MLST8Q9BVC4 326 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 PRSS22Q9GZN4 317 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 GFRA4Q9GZZ7 299 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 UQCR10Q9UDW1 63 aa7.46□□□□□ -1.21
PDGFRA-208ENST00000509490 DIDO1Q9BTC0 2240 aaKnown RBP7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 DIRC3C9JPN6 131 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 ACTL6BO94805 426 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 CA7P43166 264 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 DLX6P56179 175 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 TBR1Q16650 682 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 MRGPRG-AS1Q2M3A8 158 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 DUX4L9Q6RFH8 374 aaPredicted RBP7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 PATE2Q6UY27 113 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 C18orf32Q8TCD1 76 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 TRGV9Q99603 122 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 TMEM208Q9BTX3 173 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 KAAG1Q9UBP8 84 aa7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 MRPS16Q9Y3D3 137 aaKnown RBP7.46□□□□□ -1.22
PDGFRA-208ENST00000509490 PRR14LQ5THK1 2151 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 IGLC2P0DOY2 106 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 IGLC3P0DOY3 106 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 TNFRSF1AP19438 455 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 CD40P25942 277 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 UBE2L3P68036 154 aaKnown RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 ETFRF1Q6IPR1 90 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 CLEC2AQ6UVW9 174 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 MOB3BQ86TA1 216 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 SPACA3Q8IXA5 215 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 ZADH2Q8N4Q0 377 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 CCL13Q99616 98 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 PAXXQ9BUH6 204 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 MRPL20Q9BYC9 149 aaKnown RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 CACNA1DQ01668 2161 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 CRXO43186 299 aaPredicted RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 HIST1H1EP10412 219 aaKnown RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 PF4V1P10720 104 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 C10orf113Q5VZT2 155 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 KLHDC1Q8N7A1 406 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 FAM216BQ8N7L0 139 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 GATD1Q8NB37 220 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 OR10X1Q8NGY0 326 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 VN1R17PQ8TDU5 208 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 TNFRSF14Q92956 283 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 FLYWCH2Q96CP2 140 aaKnown RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 RCHY1Q96PM5 261 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 SAP30LQ9HAJ7 183 aa7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 ZNF331Q9NQX6 463 aaPredicted RBP7.45□□□□□ -1.22
PDGFRA-208ENST00000509490 DYSFO75923 2080 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 CRYGBP07316 175 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 SRIP30626 198 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 MC5RP33032 325 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 LGALS7P47929 136 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 WT1-ASQ06250 92 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 COL5A1-AS1Q5SY13 56 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ZNF705AQ6ZN79 300 aaPredicted RBP7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 NHLRC2Q8NBF2 726 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 OR8B3Q8NGG8 313 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 HARBI1Q96MB7 349 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 OR8B2Q96RD0 313 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 FNDC4Q9H6D8 234 aaPredicted RBP7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 LPAR2Q9HBW0 351 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 MSRB2Q9Y3D2 182 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 NPIPB6E9PJ23 425 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 C3orf79P0CE67 100 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 HOXB4P17483 251 aaPredicted RBP7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 REG1BP48304 166 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 AMTP48728 403 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 MMDQ15546 238 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 FAM201AQ5SY85 155 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ASCL5Q7RTU5 278 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 TEX45Q8NA69 505 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 NUDT10Q8NFP7 164 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 NUDT11Q96G61 164 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ATG101Q9BSB4 218 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ALKBH7Q9BT30 221 aaPredicted RBP7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ZNF355PQ9NSJ1 428 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 ZFP30Q9Y2G7 519 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 WASHC3Q9Y3C0 194 aa7.44□□□□□ -1.22
PDGFRA-208ENST00000509490 YLPM1P49750 1951 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms